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Added DESI Y1 BAO likelihood #27

Added DESI Y1 BAO likelihood

Added DESI Y1 BAO likelihood #27

Workflow file for this run

# This workflow will install Python dependencies, run tests and lint with a variety of Python versions
# For more information see: https://help.github.com/actions/language-and-framework-guides/using-python-with-github-actions
name: Continuous Integration
on:
push:
branches: [ main ]
pull_request:
branches: [ main ]
jobs:
Download_Data:
name: Download test data
runs-on: ubuntu-20.04
steps:
- name: Checkout repository
uses: actions/checkout@v2
- uses: actions/cache@v3
name: Planck Data Cache
id: cache-planck
with:
path: COM_Likelihood_Data-baseline_R3.00.tar.gz
key: planck-2018-data
enableCrossOsArchive: true
- if: ${{ steps.cache-planck.outputs.cache-hit != 'true' }}
name: Download Planck
shell: bash -l {0}
run: |
URL="https://portal.nersc.gov/cfs/lsst/zuntz/planck/COM_Likelihood_Data-baseline_R3.00.tar.gz"
FILENAME="COM_Likelihood_Data-baseline_R3.00.tar.gz"
wget -O ${FILENAME} ${URL}
- name: Cache WMAP data
id: cache-wmap
uses: actions/cache@v3
with:
path: wmap_likelihood_full_v5.tar.gz
key: wmap-9-data
enableCrossOsArchive: true
- if: ${{ steps.cache-wmap.outputs.cache-hit != 'true' }}
name: Download WMAP data
run: |
wget https://lambda.gsfc.nasa.gov/data/map/dr5/dcp/likelihood/wmap_likelihood_full_v5.tar.gz
- name: Cache ACT data
id: cache-act
uses: actions/cache@v3
with:
path: ACT_dr6_likelihood_v1.1.tgz
key: act-dr6-data
enableCrossOsArchive: true
- if: ${{ steps.cache-act.outputs.cache-hit != 'true' }}
name: Download ACT data
run: |
wget https://lambda.gsfc.nasa.gov/data/suborbital/ACT/ACT_dr6/likelihood/data/ACT_dr6_likelihood_v1.1.tgz
conda_test:
name: Conda Test
needs: Download_Data
runs-on: ${{ matrix.os }}
strategy:
fail-fast: false
matrix:
os: [ubuntu-20.04, macos-latest]
pyversion: ["3.8", "3.9", "3.10", "3.11"]
steps:
- name: Checkout repository
uses: actions/checkout@v2
- uses: conda-incubator/setup-miniconda@v2
with:
activate-environment: cosmosis-env
channels: conda-forge
miniforge-variant: Mambaforge
miniforge-version: latest
python-version: ${{ matrix.pyversion }}
- name: Install dependencies with conda
shell: bash -l {0}
run: mamba install -c conda-forge "cosmosis>=3.2" cosmosis-build-standard-library pytest
- name: Get Cached Planck
uses: actions/cache/restore@v3
with:
path: COM_Likelihood_Data-baseline_R3.00.tar.gz
key: planck-2018-data
fail-on-cache-miss: true
- name: Get Cached WMAP
uses: actions/cache/restore@v3
with:
path: wmap_likelihood_full_v5.tar.gz
key: wmap-9-data
fail-on-cache-miss: true
- name: Get Cached ACT
uses: actions/cache/restore@v3
with:
path: ACT_dr6_likelihood_v1.1.tgz
key: act-dr6-data
fail-on-cache-miss: true
- name: Extract data
shell: bash -l {0}
run: |
# WMAP
pushd likelihood/wmap9/data
tar -zxvf ../../../wmap_likelihood_full_v5.tar.gz
mv wmap_likelihood_v5/data/* .
popd
#Planck
pushd likelihood/planck2018
tar -zxvf ../../COM_Likelihood_Data-baseline_R3.00.tar.gz
popd
# ACT
mkdir likelihood/act-dr6-lens/data
pushd likelihood/act-dr6-lens/data
tar -zxvf ../../../ACT_dr6_likelihood_v1.1.tgz
popd
- name: Build standard library
shell: bash -l {0}
run: |
source cosmosis-configure
make
- name: Install likelihood python dependencies from pip
shell: bash -l {0}
run: |
pip install "act_dr6_lenslike>=1.0.2"
- name: Run Tests
shell: bash -l {0}
run: |
source cosmosis-configure
pytest -vv --durations=0 tests/test_cosmosis_standard_library.py
- name: Run Demos
shell: bash -l {0}
run: |
source cosmosis-configure
pytest -vv --durations=0 tests/test_demos.py
apt-get-test:
runs-on: ubuntu-20.04
needs: Download_Data
strategy:
matrix:
python-version: [3.7, 3.8, 3.9, "3.10", "3.11"]
steps:
- name: Checkout repository
uses: actions/checkout@v2
with:
submodules: true
- name: Set up Python ${{ matrix.python-version }}
uses: actions/setup-python@v2
with:
python-version: ${{ matrix.python-version }}
- name: Install apt dependencies
run: |
sudo apt-get update
sudo apt-get -y install gfortran-7 swig libopenmpi-dev openmpi-bin libopenblas-dev
sudo ln -s `which gfortran-7` /usr/local/bin/gfortran
sudo apt-get -y install libgsl-dev libfftw3-bin libfftw3-dev libfftw3-3 autotools-dev autoconf libcfitsio-dev
- name: Get Cached Planck
uses: actions/cache/restore@v3
with:
path: COM_Likelihood_Data-baseline_R3.00.tar.gz
key: planck-2018-data
fail-on-cache-miss: true
- name: Get Cached WMAP
uses: actions/cache/restore@v3
with:
path: wmap_likelihood_full_v5.tar.gz
key: wmap-9-data
fail-on-cache-miss: true
- name: Get Cached ACT
uses: actions/cache/restore@v3
with:
path: ACT_dr6_likelihood_v1.1.tgz
key: act-dr6-data
fail-on-cache-miss: true
- name: Extract data
shell: bash -l {0}
run: |
# WMAP
pushd likelihood/wmap9/data
tar -zxvf ../../../wmap_likelihood_full_v5.tar.gz
mv wmap_likelihood_v5/data/* .
popd
#Planck
pushd likelihood/planck2018
tar -zxvf ../../COM_Likelihood_Data-baseline_R3.00.tar.gz
popd
# ACT
mkdir likelihood/act-dr6-lens/data
pushd likelihood/act-dr6-lens/data
tar -zxvf ../../../ACT_dr6_likelihood_v1.1.tgz
popd
- uses: actions/cache@v2
name: Load pip cache
id: cache-pip
with:
path: ~/.cache/pip
key: ${{ runner.os }}-pip-${{ matrix.python-version }}-${{ hashFiles('**/setup.py') }}-v2
- name: Install python dependencies
run: |
python -m pip install --upgrade pip wheel setuptools
pip install "cosmosis>=3.2" "nautilus-sampler==0.6.*"
pip install -v --no-cache-dir --no-binary=mpi4py,camb mpi4py camb
pip install fitsio astropy fast-pt "Cython<3.0" jupyter
- name: Install likelihood python dependencies
run: |
pip install "act_dr6_lenslike>=1.0.2"
- name: Build
run: |
source .github/ci-setup.sh && make
# I have seen some failures here
- name: Check camb installation
run: |
source .github/ci-setup.sh
python -c "import camb"
- name: Test campaign commands
shell: bash -l {0}
run: |
source .github/ci-setup.sh
cosmosis-campaign -l examples/des-campaign.yml | tee output/campaign.log
grep -e "mira-titan" campaign.log
grep -e "fiducial" campaign.log
cosmosis-campaign --run fiducial-test-only examples/des-campaign.yml
cosmosis-campaign examples/des-campaign.yml --status fiducial-test-only > output/campaign.log
grep -e "🟢 fiducial-test-only" output/campaign.log
cosmosis-campaign examples/des-campaign.yml --status
- name: ExampleNotebook
shell: bash -l {0}
run: |
source cosmosis-configure
rm -f output/pantheon.txt
jupyter nbconvert --to notebook --execute "examples/example.ipynb"