Added DESI Y1 BAO likelihood #27
This file contains bidirectional Unicode text that may be interpreted or compiled differently than what appears below. To review, open the file in an editor that reveals hidden Unicode characters.
Learn more about bidirectional Unicode characters
# This workflow will install Python dependencies, run tests and lint with a variety of Python versions | |
# For more information see: https://help.github.com/actions/language-and-framework-guides/using-python-with-github-actions | |
name: Continuous Integration | |
on: | |
push: | |
branches: [ main ] | |
pull_request: | |
branches: [ main ] | |
jobs: | |
Download_Data: | |
name: Download test data | |
runs-on: ubuntu-20.04 | |
steps: | |
- name: Checkout repository | |
uses: actions/checkout@v2 | |
- uses: actions/cache@v3 | |
name: Planck Data Cache | |
id: cache-planck | |
with: | |
path: COM_Likelihood_Data-baseline_R3.00.tar.gz | |
key: planck-2018-data | |
enableCrossOsArchive: true | |
- if: ${{ steps.cache-planck.outputs.cache-hit != 'true' }} | |
name: Download Planck | |
shell: bash -l {0} | |
run: | | |
URL="https://portal.nersc.gov/cfs/lsst/zuntz/planck/COM_Likelihood_Data-baseline_R3.00.tar.gz" | |
FILENAME="COM_Likelihood_Data-baseline_R3.00.tar.gz" | |
wget -O ${FILENAME} ${URL} | |
- name: Cache WMAP data | |
id: cache-wmap | |
uses: actions/cache@v3 | |
with: | |
path: wmap_likelihood_full_v5.tar.gz | |
key: wmap-9-data | |
enableCrossOsArchive: true | |
- if: ${{ steps.cache-wmap.outputs.cache-hit != 'true' }} | |
name: Download WMAP data | |
run: | | |
wget https://lambda.gsfc.nasa.gov/data/map/dr5/dcp/likelihood/wmap_likelihood_full_v5.tar.gz | |
- name: Cache ACT data | |
id: cache-act | |
uses: actions/cache@v3 | |
with: | |
path: ACT_dr6_likelihood_v1.1.tgz | |
key: act-dr6-data | |
enableCrossOsArchive: true | |
- if: ${{ steps.cache-act.outputs.cache-hit != 'true' }} | |
name: Download ACT data | |
run: | | |
wget https://lambda.gsfc.nasa.gov/data/suborbital/ACT/ACT_dr6/likelihood/data/ACT_dr6_likelihood_v1.1.tgz | |
conda_test: | |
name: Conda Test | |
needs: Download_Data | |
runs-on: ${{ matrix.os }} | |
strategy: | |
fail-fast: false | |
matrix: | |
os: [ubuntu-20.04, macos-latest] | |
pyversion: ["3.8", "3.9", "3.10", "3.11"] | |
steps: | |
- name: Checkout repository | |
uses: actions/checkout@v2 | |
- uses: conda-incubator/setup-miniconda@v2 | |
with: | |
activate-environment: cosmosis-env | |
channels: conda-forge | |
miniforge-variant: Mambaforge | |
miniforge-version: latest | |
python-version: ${{ matrix.pyversion }} | |
- name: Install dependencies with conda | |
shell: bash -l {0} | |
run: mamba install -c conda-forge "cosmosis>=3.2" cosmosis-build-standard-library pytest | |
- name: Get Cached Planck | |
uses: actions/cache/restore@v3 | |
with: | |
path: COM_Likelihood_Data-baseline_R3.00.tar.gz | |
key: planck-2018-data | |
fail-on-cache-miss: true | |
- name: Get Cached WMAP | |
uses: actions/cache/restore@v3 | |
with: | |
path: wmap_likelihood_full_v5.tar.gz | |
key: wmap-9-data | |
fail-on-cache-miss: true | |
- name: Get Cached ACT | |
uses: actions/cache/restore@v3 | |
with: | |
path: ACT_dr6_likelihood_v1.1.tgz | |
key: act-dr6-data | |
fail-on-cache-miss: true | |
- name: Extract data | |
shell: bash -l {0} | |
run: | | |
# WMAP | |
pushd likelihood/wmap9/data | |
tar -zxvf ../../../wmap_likelihood_full_v5.tar.gz | |
mv wmap_likelihood_v5/data/* . | |
popd | |
#Planck | |
pushd likelihood/planck2018 | |
tar -zxvf ../../COM_Likelihood_Data-baseline_R3.00.tar.gz | |
popd | |
# ACT | |
mkdir likelihood/act-dr6-lens/data | |
pushd likelihood/act-dr6-lens/data | |
tar -zxvf ../../../ACT_dr6_likelihood_v1.1.tgz | |
popd | |
- name: Build standard library | |
shell: bash -l {0} | |
run: | | |
source cosmosis-configure | |
make | |
- name: Install likelihood python dependencies from pip | |
shell: bash -l {0} | |
run: | | |
pip install "act_dr6_lenslike>=1.0.2" | |
- name: Run Tests | |
shell: bash -l {0} | |
run: | | |
source cosmosis-configure | |
pytest -vv --durations=0 tests/test_cosmosis_standard_library.py | |
- name: Run Demos | |
shell: bash -l {0} | |
run: | | |
source cosmosis-configure | |
pytest -vv --durations=0 tests/test_demos.py | |
apt-get-test: | |
runs-on: ubuntu-20.04 | |
needs: Download_Data | |
strategy: | |
matrix: | |
python-version: [3.7, 3.8, 3.9, "3.10", "3.11"] | |
steps: | |
- name: Checkout repository | |
uses: actions/checkout@v2 | |
with: | |
submodules: true | |
- name: Set up Python ${{ matrix.python-version }} | |
uses: actions/setup-python@v2 | |
with: | |
python-version: ${{ matrix.python-version }} | |
- name: Install apt dependencies | |
run: | | |
sudo apt-get update | |
sudo apt-get -y install gfortran-7 swig libopenmpi-dev openmpi-bin libopenblas-dev | |
sudo ln -s `which gfortran-7` /usr/local/bin/gfortran | |
sudo apt-get -y install libgsl-dev libfftw3-bin libfftw3-dev libfftw3-3 autotools-dev autoconf libcfitsio-dev | |
- name: Get Cached Planck | |
uses: actions/cache/restore@v3 | |
with: | |
path: COM_Likelihood_Data-baseline_R3.00.tar.gz | |
key: planck-2018-data | |
fail-on-cache-miss: true | |
- name: Get Cached WMAP | |
uses: actions/cache/restore@v3 | |
with: | |
path: wmap_likelihood_full_v5.tar.gz | |
key: wmap-9-data | |
fail-on-cache-miss: true | |
- name: Get Cached ACT | |
uses: actions/cache/restore@v3 | |
with: | |
path: ACT_dr6_likelihood_v1.1.tgz | |
key: act-dr6-data | |
fail-on-cache-miss: true | |
- name: Extract data | |
shell: bash -l {0} | |
run: | | |
# WMAP | |
pushd likelihood/wmap9/data | |
tar -zxvf ../../../wmap_likelihood_full_v5.tar.gz | |
mv wmap_likelihood_v5/data/* . | |
popd | |
#Planck | |
pushd likelihood/planck2018 | |
tar -zxvf ../../COM_Likelihood_Data-baseline_R3.00.tar.gz | |
popd | |
# ACT | |
mkdir likelihood/act-dr6-lens/data | |
pushd likelihood/act-dr6-lens/data | |
tar -zxvf ../../../ACT_dr6_likelihood_v1.1.tgz | |
popd | |
- uses: actions/cache@v2 | |
name: Load pip cache | |
id: cache-pip | |
with: | |
path: ~/.cache/pip | |
key: ${{ runner.os }}-pip-${{ matrix.python-version }}-${{ hashFiles('**/setup.py') }}-v2 | |
- name: Install python dependencies | |
run: | | |
python -m pip install --upgrade pip wheel setuptools | |
pip install "cosmosis>=3.2" "nautilus-sampler==0.6.*" | |
pip install -v --no-cache-dir --no-binary=mpi4py,camb mpi4py camb | |
pip install fitsio astropy fast-pt "Cython<3.0" jupyter | |
- name: Install likelihood python dependencies | |
run: | | |
pip install "act_dr6_lenslike>=1.0.2" | |
- name: Build | |
run: | | |
source .github/ci-setup.sh && make | |
# I have seen some failures here | |
- name: Check camb installation | |
run: | | |
source .github/ci-setup.sh | |
python -c "import camb" | |
- name: Test campaign commands | |
shell: bash -l {0} | |
run: | | |
source .github/ci-setup.sh | |
cosmosis-campaign -l examples/des-campaign.yml | tee output/campaign.log | |
grep -e "mira-titan" campaign.log | |
grep -e "fiducial" campaign.log | |
cosmosis-campaign --run fiducial-test-only examples/des-campaign.yml | |
cosmosis-campaign examples/des-campaign.yml --status fiducial-test-only > output/campaign.log | |
grep -e "🟢 fiducial-test-only" output/campaign.log | |
cosmosis-campaign examples/des-campaign.yml --status | |
- name: ExampleNotebook | |
shell: bash -l {0} | |
run: | | |
source cosmosis-configure | |
rm -f output/pantheon.txt | |
jupyter nbconvert --to notebook --execute "examples/example.ipynb" |