ensure -a/-b are positive

deeptools · Mar 27, 2024 · 5a58993 · 5a58993
1 parent 5a04290
commit 5a58993
Showing 1 changed file with 8 additions and 0 deletions.
diff --git a/deeptools/computeMatrix.py b/deeptools/computeMatrix.py
@@ -354,6 +354,14 @@ def process_args(args=None):
 
     if args.quiet is True:
         args.verbose = False
+
+    # Ensure before and after region length is positive
+    if args.beforeRegionStartLength < 0:
+        print(f"beforeRegionStartLength changed from {args.beforeRegionStartLength} into {abs(args.beforeRegionStartLength)}")
+        args.beforeRegionStartLength = abs(args.beforeRegionStartLength)
+    if args.afterRegionStartLength < 0:
+        print(f"afterRegionStartLength changed from {args.afterRegionStartLength} into {abs(args.afterRegionStartLength)}")
+        args.afterRegionStartLength = abs(args.afterRegionStartLength)
 
     if args.command == 'scale-regions':
         args.nanAfterEnd = False