np.{type} to {type} #272
Workflow file for this run
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| name: Test | |
| on: [push, pull_request] | |
| jobs: | |
| check_versions_matches: | |
| name: Check deeptools version matches galaxy tools | |
| runs-on: ubuntu-latest | |
| if: github.base_ref == 'master' | |
| steps: | |
| - uses: actions/checkout@v1 | |
| - name: Check path | |
| run: find /home/runner/work/deepTools/deepTools -name "_version.py" | |
| - name: Get Version of Deeptools | |
| run: echo "deeptools_version=$(grep "__version__" /home/runner/work/deepTools/deepTools/deeptools/_version.py | awk '{print substr($NF, 2, length($NF) - 2)}')" >> $GITHUB_ENV | |
| - name: Get Version of Galaxy tools | |
| run: echo "galaxy_deeptools_version=$(grep "token.*TOOL_VERSION" /home/runner/work/deepTools/deepTools/galaxy/wrapper/deepTools_macros.xml | awk -F '>|<' '{print $3}')" >> $GITHUB_ENV | |
| - name: Versions | |
| run: | | |
| echo deeptools version=${deeptools_version} | |
| echo deeptools version in galaxy=${galaxy_deeptools_version} | |
| - name: Fail PR if versions not matching | |
| run: | | |
| if [ -z $galaxy_deeptools_version ]; then | |
| echo "galaxy_deeptools_version not defined change the github action" | |
| exit 1 | |
| fi | |
| if [ -z $deeptools_version ]; then | |
| echo "deeptools_version not defined change the github action" | |
| exit 1 | |
| fi | |
| if [ "$galaxy_deeptools_version" != "$deeptools_version" ]; then | |
| echo "versions do not match" | |
| exit 1 | |
| fi | |
| build-linux: | |
| name: Test on Linux | |
| runs-on: ubuntu-latest | |
| steps: | |
| - uses: actions/checkout@v1 | |
| - uses: "dpryan79/github-actions/@master" | |
| - name: PEP8 | |
| run: | | |
| source activate foo | |
| flake8 . --exclude=.venv,.build,build --ignore=E501,F403,E402,F999,F405,E722,W504,W605 | |
| - name: Test deepTools | |
| run: | | |
| source activate foo | |
| nosetests --with-doctest -sv deeptools | |
| - name: make an artifact | |
| run: | | |
| source activate foo | |
| rm -f dist/* | |
| python setup.py sdist | |
| - uses: actions/upload-artifact@master | |
| with: | |
| name: "Dist files" | |
| path: "dist" | |
| build-osx: | |
| name: Test on OSX | |
| runs-on: macOS-latest | |
| steps: | |
| - uses: actions/checkout@v1 | |
| - uses: "dpryan79/github-actions/@master" | |
| - name: Test deepTools | |
| run: | | |
| source activate foo | |
| nosetests --with-doctest -sv deeptools |