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merge #1662 to devel #1669

Merged
merged 1 commit into from
Nov 23, 2024
Merged

merge #1662 to devel #1669

merged 1 commit into from
Nov 23, 2024

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njzjz
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@njzjz njzjz commented Nov 15, 2024

#1662 was wrongly merged into master.

Summary by CodeRabbit

  • New Features

    • Enhanced input generation for LAMMPS to accommodate electron temperature settings.
    • Added a new parameter, use_ele_temp, for improved flexibility in input handling.
  • Bug Fixes

    • Ensured correct retrieval and passing of the use_ele_temp value during model deviation tasks.

in previous version, if we use `template` in model deviation process,
the generated LAMMPS input file would neglect fparam-dependence in DP
model, as
```
pair_style      deepmd ../graph.000.pb ../graph.001.pb ../graph.002.pb ../graph.003.pb out_freq 10 out_file model_devi.out 
pair_coeff      * *
```



here we fixed this problem, as 
```
pair_style      deepmd ../graph.000.pb ../graph.001.pb ../graph.002.pb ../graph.003.pb out_freq 10 out_file model_devi.out fparam ${ELE_TEMP}
pair_coeff      * *

```

<!-- This is an auto-generated comment: release notes by coderabbit.ai
-->

## Summary by CodeRabbit

- **New Features**
- Enhanced the LAMMPS input model to support configurations based on
electron temperature settings.
- Added flexibility in handling different input scenarios with the
introduction of a new parameter.

- **Bug Fixes**
- Improved compatibility checks for the specified DeepMD version in the
input model construction.

- **Documentation**
- Updated comments for clarity regarding the new functionality and
parameter usage.

<!-- end of auto-generated comment: release notes by coderabbit.ai -->

---------

Co-authored-by: pre-commit-ci[bot] <66853113+pre-commit-ci[bot]@users.noreply.github.com>
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codecov bot commented Nov 15, 2024

Codecov Report

Attention: Patch coverage is 94.73684% with 1 line in your changes missing coverage. Please review.

Project coverage is 49.53%. Comparing base (47a23b3) to head (6943db5).
Report is 67 commits behind head on devel.

Files with missing lines Patch % Lines
dpgen/generator/run.py 94.73% 1 Missing ⚠️
Additional details and impacted files
@@            Coverage Diff             @@
##            devel    #1669      +/-   ##
==========================================
+ Coverage   49.50%   49.53%   +0.03%     
==========================================
  Files          83       83              
  Lines       14818    14853      +35     
==========================================
+ Hits         7336     7358      +22     
- Misses       7482     7495      +13     

☔ View full report in Codecov by Sentry.
📢 Have feedback on the report? Share it here.


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coderabbitai bot commented Nov 15, 2024

📝 Walkthrough

Walkthrough

The pull request modifies the revise_lmp_input_model function in the dpgen/generator/run.py file by adding a new parameter, use_ele_temp, which allows for conditional formatting of the LAMMPS input based on its value. The make_model_devi function is also updated to ensure the new parameter is correctly passed to revise_lmp_input_model. These changes enhance the function's capability to accommodate variations in electron temperature settings during input generation.

Changes

File Change Summary
dpgen/generator/run.py Updated revise_lmp_input_model to include use_ele_temp parameter and modified internal logic for LAMMPS input formatting. Updated make_model_devi to retrieve and pass use_ele_temp from job data.

Possibly related PRs

  • support fparam in lmp template #1662: This PR modifies the revise_lmp_input_model function in the same file, adding the use_ele_temp parameter and altering the function's logic to conditionally format the LAMMPS input based on this parameter, directly relating to the changes made in the main PR.

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Actionable comments posted: 0

🧹 Outside diff range and nitpick comments (1)
dpgen/generator/run.py (1)

1008-1010: Add docstring for the new use_ele_temp parameter.

The function signature has been updated but lacks documentation for the new parameter. Consider adding parameter description:

def revise_lmp_input_model(
    lmp_lines, task_model_list, trj_freq, deepmd_version="1", use_ele_temp=0
):
+    """
+    Parameters
+    ----------
+    use_ele_temp : int, optional
+        Controls electron temperature handling:
+        0: Disabled (default)
+        1: Enable with fparam
+        2: Enable with aparam
+    """
📜 Review details

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Review profile: CHILL

📥 Commits

Reviewing files that changed from the base of the PR and between c2db0fa and 6943db5.

📒 Files selected for processing (1)
  • dpgen/generator/run.py (6 hunks)
🧰 Additional context used
🪛 GitHub Check: codecov/patch
dpgen/generator/run.py

[warning] 1032-1032: dpgen/generator/run.py#L1032
Added line #L1032 was not covered by tests

🔇 Additional comments (2)
dpgen/generator/run.py (2)

1019-1033: LGTM! Clean implementation of electron temperature support.

The conditional logic correctly handles the electron temperature parameter by adding fparam ${ELE_TEMP} to the pair_style command when enabled. The implementation is clean and consistent with the requirements.

🧰 Tools
🪛 GitHub Check: codecov/patch

[warning] 1032-1032: dpgen/generator/run.py#L1032
Added line #L1032 was not covered by tests


Line range hint 1303-1440: LGTM! Proper propagation of electron temperature parameter.

The electron temperature parameter is correctly propagated to the revise_lmp_input_model function calls. The implementation maintains consistency across the codebase.

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njzjz commented Nov 15, 2024

It looks that the CI is broken again...

@njzjz njzjz closed this Nov 23, 2024
@njzjz njzjz reopened this Nov 23, 2024
@njzjz njzjz merged commit a5bf532 into deepmodeling:devel Nov 23, 2024
16 of 21 checks passed
@njzjz njzjz deleted the master-pre-0.13.0 branch November 23, 2024 07:22
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2 participants