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minor doc clarification for compute options
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donaldcampbelljr committed Dec 11, 2023
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Expand Up @@ -47,3 +47,10 @@ divvy init $DIVCFG
```

Next, you edit that config file to add in any compute packages you need. `PEPATAC` will then give you access to any of your custom packages with `looper --package <compute_package>`. For complete instructions on how to create a custom compute package, read [how to configure divvy](https://divvy.databio.org/en/latest/configuration/).

Alternatively, you can specify compute parameters via the CLI:

```console
looper run examples/test_project/test_config_refgenie.yaml -d \
--package slurm --compute PARTITION="your_cluster_partition_name"
```

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