edit bedset PEP looper section

databio · May 28, 2020 · cca10ad · cca10ad
1 parent de50080
commit cca10ad
Showing 1 changed file with 1 addition and 2 deletions.
diff --git a/pipelines/bedbuncher.py b/pipelines/bedbuncher.py
@@ -239,8 +239,7 @@ def main():
         y.sample_table = {}
         y.sample_table = bedset_annotation_sheet
         y.looper = {}
-        y.looper.run = {}
-        y.looper.run.output_dir = logs_dir 
+        y.looper.output_dir = logs_dir 
         y.iGD_db = {}
         y.iGD_db = os.path.join(igd_folder_name, args.bedset_name + ".igd")
         y.iGD_index = {}