Upload one gse #2
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| name: Upload one gse | |
| on: | |
| workflow_dispatch: | |
| inputs: | |
| gse: | |
| description: 'gse number. ["GSE12345"]' | |
| required: true | |
| jobs: | |
| build: | |
| runs-on: ${{ matrix.os }} | |
| strategy: | |
| matrix: | |
| python-version: [ "3.11" ] | |
| os: [ ubuntu-latest ] | |
| steps: | |
| - uses: actions/checkout@v4 | |
| - name: Set up Python | |
| uses: actions/setup-python@v5 | |
| with: | |
| python-version: '3.x' | |
| - name: Install dependencies | |
| run: | | |
| python -m pip install --upgrade pip | |
| pip install uv | |
| uv pip install git+https://github.com/databio/bedboss.git@partial_processing#egg=bedboss --system | |
| - name: Do something here | |
| run: | | |
| echo "Hello, ${{ github.actor }}" | |
| echo "The GSE is ${{ inputs.gse }}" |