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release 0.4.0 #25

Merged
merged 124 commits into from
Dec 18, 2023
Merged

release 0.4.0 #25

merged 124 commits into from
Dec 18, 2023

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khoroshevskyi
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@khoroshevskyi khoroshevskyi commented Oct 17, 2023 •
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Changes

  • New pipestat
  • Added qdrant add and search using geniml
  • Fixed tests
  • Refactored code

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donaldcampbelljr and others added 30 commits July 21, 2023 17:03
@donaldcampbelljr
begin work aligning bbconf with pipestat 0.4.0
44bc43c
@donaldcampbelljr
fix some tests, add context manager for db, make todos
e66e3e4
@donaldcampbelljr
lint
b45b806
@donaldcampbelljr
Update run-pytest.yml
97d5d93 
update to supported python versions (3.8 and greater)
@donaldcampbelljr
fix some pytests
23c44d7
@donaldcampbelljr
fix remaining pytests, fix reporting and removing relationships, impl…
ea4361e 
…ement _check_table_exists func.
@donaldcampbelljr
update yacman version requirements
5a940e0
@donaldcampbelljr
update run-pytests.yml
071a185
@donaldcampbelljr
Merge remote-tracking branch 'origin/dev' into dev
dd6d576
@donaldcampbelljr
update run-pytests.yml to use ""
2cfc3d9
@donaldcampbelljr
update requirements for testing
cf2cdca
@donaldcampbelljr
change default pipeline names for brevity
e13a5c3
@donaldcampbelljr
add build/ to git ignore
0fcaaa6
@donaldcampbelljr
change select_unique to use pipestat
546d39e
@donaldcampbelljr
clean up select_unique
f727d19
@donaldcampbelljr
add select_bedfiles_for_bedset to test
ef10cf9
@khoroshevskyi
restructuring 1
0fdf43b
@khoroshevskyi
restructuring 2 - converting association table from sqlalchemy to sql…
6269ac9 
…model
@xuebingjie1990
fix missing params
453c6c5
@khoroshevskyi
restructuring 3 - cleaning
5003825
@khoroshevskyi
fixed typo
63b8366
@khoroshevskyi
Merge branch 'dev' into pipestat_update_040
a2e0782
@khoroshevskyi
added GitHub actions test
3eaacb2
@khoroshevskyi
fixed tests
b4e3253
@khoroshevskyi
fixed tests 2
ec57185
@khoroshevskyi
fixed tests 3
c8cc3dd
@khoroshevskyi
Merge pull request #18 from databio/pipestat_update_040
1072ef8 
Pipestat update 040
@khoroshevskyi
fixed version
626e221
@khoroshevskyi
cleaning const
0508488
@khoroshevskyi
cleaning const 2
7841b61
donaldcampbelljr
donaldcampbelljr reviewed Nov 9, 2023
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donaldcampbelljr
donaldcampbelljr reviewed Nov 9, 2023
View reviewed changes
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@khoroshevskyi khoroshevskyi merged commit 2d3b4be into master Dec 18, 2023
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@donaldcampbelljr donaldcampbelljr donaldcampbelljr approved these changes

@nsheff nsheff Awaiting requested review from nsheff

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@khoroshevskyi @donaldcampbelljr @xuebingjie1990 @nsheff @ClaudeHu