Refactor CMake #145

	name: Run tests

	on:
	push:
	branches:
	- main
	- dev
	pull_request:
	workflow_dispatch:

	jobs:
	test:
	runs-on: ubuntu-latest
	strategy:
	fail-fast: false
	matrix:
	case: ["bomex", "benchmark/rico"]
	steps:
	- uses: actions/checkout@v2
	with:
	submodules: 'true'

	- name: Install build dependencies
	run: \|
	sudo sed -i '/^#\sdeb-src /s/^#//' "/etc/apt/sources.list"
	sudo apt-get update
	sudo apt-get install -y cmake libfftw3-dev libhypre-dev libnetcdf-dev libopenmpi-dev libnetcdff-dev

	- name: Set up Build
	run: \|
	mkdir build
	cd build
	cmake --preset=gnu -DCMAKE_BUILD_TYPE=Debug ../

	- name: Build
	run: \|
	cd build
	make -j 2

	- name: Setup Python 3.11
	uses: actions/setup-python@v5
	with:
	python-version: '3.11'

	- name: Install Python dependencies
	run: \|
	python -m pip install --upgrade pip
	python -m pip install -r requirements.txt

	- name: Run tests
	run: \|
	export DALES=/home/runner/work/dales/dales/build/bin/dales
	pytest -rf --assert=plain --case=${{ matrix.case }}

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