Update monthly-update.yml #3

	name: Monthly Update

	on:
	schedule:
	- cron: '0 0 25 * *' # Runs at 00:00 on the 25th day of each month
	workflow_dispatch: # Allows manual triggering for testing

	jobs:
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	update:
	runs-on: ubuntu-latest

	steps:
	- name: Checkout repository
	uses: actions/checkout@v2

	- name: Set up Python
	uses: actions/setup-python@v2
	with:
	python-version: '3.x'

	- name: Install dependencies
	run: \|
	python -m pip install --upgrade pip
	pip install -r www/python/src/requirements.txt

	- name: Run fetch_wikipedia_genes
	run: python www/python/src/fetch_wikipedia_genes.py

	- name: Run generate_gmt
	run: python www/python/src/generate_gmt.py

	- name: Commit changes
	run: \|
	git config --local user.email "[email protected]"
	git config --local user.name "Tiago Lubiana"
	git add .
	git commit -m "Monthly update: fetch genes and generate GMT"
	env:
	GITHUB_TOKEN: ${{ secrets.GITHUB_TOKEN }}

	- name: Bump version and push
	run: \|
	pip install bump2version
	bump2version minor --allow-dirty --commit --tag --verbose
	git push --follow-tags
	env:
	GITHUB_TOKEN: ${{ secrets.GITHUB_TOKEN }}

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