Violin plots #323
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| # NOTE: This workflow is overkill for most R packages | |
| # check-standard.yaml is likely a better choice | |
| # usethis::use_github_action("check-standard") will install it. | |
| # | |
| # For help debugging build failures open an issue on the RStudio community with the 'github-actions' tag. | |
| # https://community.rstudio.com/new-topic?category=Package%20development&tags=github-actions | |
| on: | |
| push: | |
| branches: | |
| - main | |
| - devel | |
| pull_request: | |
| branches: | |
| - main | |
| - devel | |
| name: R-CMD-check | |
| jobs: | |
| R-CMD-check: | |
| runs-on: ${{ matrix.config.os }} | |
| name: ${{ matrix.config.os }} (${{ matrix.config.r }}) | |
| strategy: | |
| fail-fast: false | |
| matrix: | |
| config: | |
| - {os: macOS-latest, r: 'release'} | |
| - {os: windows-latest, r: 'release'} | |
| - {os: ubuntu-20.04, r: 'devel', rspm: "https://packagemanager.rstudio.com/cran/__linux__/focal/latest", http-user-agent: "R/4.1.0 (ubuntu-20.04) R (4.1.0 x86_64-pc-linux-gnu x86_64 linux-gnu) on GitHub Actions" } | |
| - {os: ubuntu-20.04, r: 'release', rspm: "https://packagemanager.rstudio.com/cran/__linux__/focal/latest"} | |
| - {os: ubuntu-20.04, r: 'oldrel', rspm: "https://packagemanager.rstudio.com/cran/__linux__/focal/latest"} | |
| env: | |
| RSPM: ${{ matrix.config.rspm }} | |
| GITHUB_PAT: ${{ secrets.GITHUB_TOKEN }} | |
| steps: | |
| - uses: actions/checkout@v2 | |
| - uses: r-lib/actions/setup-r@v2 | |
| id: install-r | |
| with: | |
| r-version: ${{ matrix.config.r }} | |
| http-user-agent: ${{ matrix.config.http-user-agent }} | |
| - uses: r-lib/actions/setup-pandoc@v2 | |
| - uses: r-lib/actions/setup-tinytex@v2 | |
| - run: tlmgr --version | |
| - run: tlmgr install apa6 threeparttable caption fancyhdr endfloat was multirow threeparttablex environ trimspaces lineno csquotes babel-english grfext | |
| - name: Install Ghostscript on Linux | |
| if: runner.os == 'Linux' | |
| run: sudo DEBIAN_FRONTEND=noninteractive apt-get install --yes ghostscript | |
| - name: Install Ghostscript on macOS | |
| if: runner.os == 'macOS' | |
| run: brew install ghostscript | |
| - name: Install Ghostscript on Windows | |
| if: runner.os == 'Windows' | |
| run: choco install ghostscript --no-progress | |
| - name: Install pak and query dependencies | |
| run: | | |
| cat("::group::Install pak\n") | |
| options(pak.no_extra_messages = TRUE) | |
| install.packages("pak", repos = "https://r-lib.github.io/p/pak/dev/") | |
| deps <- pak::pkg_deps( | |
| "local::." | |
| , dependencies = list( | |
| direct = c("Depends", "Imports", "LinkingTo", "Suggests") | |
| , indirect = c("Depends", "Imports", "LinkingTo") | |
| ) | |
| ) | |
| saveRDS(deps, ".github/r-depends.rds") | |
| shell: Rscript {0} | |
| - name: Get R and OS version | |
| id: get-version | |
| run: | | |
| cat("::set-output name=os-version::", sessionInfo()$running, "\n", sep = "") | |
| cat("::set-output name=r-version::", R.Version()$version.string, "\n", sep = "") | |
| cat("::endgroup::\n") | |
| shell: Rscript {0} | |
| - name: Restore R package cache | |
| uses: actions/cache@v2 | |
| with: | |
| path: | | |
| ${{ env.R_LIBS_USER }}/* | |
| !${{ env.R_LIBS_USER }}/pak | |
| key: ${{ steps.get-version.outputs.os-version }}-${{ steps.get-version.outputs.r-version }}-${{inputs.cache-version }}-${{ hashFiles('.github/r-depends.rds') }} | |
| restore-keys: ${{ steps.get-version.outputs.os-version }}-${{ steps.get-version.outputs.r-version }}-${{inputs.cache-version }}- | |
| - name: Install dependencies | |
| run: | | |
| cat("::group::Install dependencies\n") | |
| options(pak.no_extra_messages = TRUE) | |
| local_deps <- pak::local_dev_deps(dependencies = TRUE)[["ref"]] | |
| needs <- sprintf("Config/Needs/%s", strsplit("${{ inputs.needs }}", "[[:space:],]+")[[1]]) | |
| needs_deps <- pak::local_dev_deps(dependencies = needs)[["ref"]] | |
| needs_only_deps <- setdiff(needs_deps, local_deps) | |
| extra_deps <- c("rcmdcheck", "covr") | |
| if (Sys.info()[["sysname"]] == "Linux") { | |
| pak::local_system_requirements(execute = TRUE) | |
| for (dep in c(needs_only_deps, extra_deps)) { | |
| pak::pkg_system_requirements(dep, execute = TRUE) | |
| } | |
| } | |
| pak::pkg_install(c(local_deps, needs_only_deps, extra_deps, "sessioninfo")) | |
| cat("::endgroup::\n") | |
| shell: Rscript {0} | |
| - name: Session info | |
| run: | | |
| cat("::group::Session info\n") | |
| options(width = 100) | |
| pkgs <- installed.packages()[, "Package"] | |
| sessioninfo::session_info(pkgs, include_base = TRUE) | |
| cat("::endgroup::\n") | |
| shell: Rscript {0} | |
| - name: Don't use tar 1.30 from Rtools35 to store the cache | |
| shell: bash | |
| run: | | |
| if command -v /c/Rtools/bin/tar && /c/Rtools/bin/tar --version | grep -q 'tar (GNU tar) 1.30' | |
| then echo 'C:/Program Files/Git/usr/bin' >> $GITHUB_PATH | |
| fi | |
| - uses: r-lib/actions/check-r-package@v2 | |
| with: | |
| build_args: '"--compact-vignettes=both"' | |
| - name: Code Coverage | |
| env: | |
| _R_CHECK_CRAN_INCOMING_: false | |
| run: covr::codecov() | |
| shell: Rscript {0} | |
| - name: Show testthat output | |
| if: always() | |
| run: find check -name 'testthat.Rout*' -exec cat '{}' \; || true | |
| shell: bash | |
| - name: Upload check results | |
| if: failure() | |
| uses: actions/upload-artifact@main | |
| with: | |
| name: ${{ matrix.config.os }}-r${{ matrix.config.r }}-results | |
| path: check | |
| - name: Don't use tar from old Rtools to store the cache | |
| if: ${{ runner.os == 'Windows' && startsWith(steps.install-r.outputs.installed-r-version, '3.6' ) }} | |
| shell: bash | |
| run: echo "C:/Program Files/Git/usr/bin" >> $GITHUB_PATH |