add code coverage to travis

computational-metabolomics · Apr 1, 2019 · 76b8113 · 76b8113
1 parent e05ace2
commit 76b8113
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Showing 5 changed files with 21 additions and 1 deletion.
diff --git a/.Rbuildignore b/.Rbuildignore
@@ -1,3 +1,4 @@
+^codecov\.yml$
 ^.*\.Rproj$
 ^\.Rproj\.user$
 ^\.git$

diff --git a/.travis.yml b/.travis.yml
@@ -3,3 +3,5 @@ r: bioc-devel
 sudo: false
 cache: packages
 warnings_are_errors: false
+after_success:
+    - Rscript -e 'covr::codecov()'
diff --git a/DESCRIPTION b/DESCRIPTION
@@ -12,4 +12,6 @@ Imports: impute, pcaMethods, missForest
 Encoding: UTF-8
 LazyData: true
 RoxygenNote: 6.1.1
-Suggests: testthat
+Suggests: 
+    testthat,
+    covr
diff --git a/README.rst b/README.rst
@@ -49,3 +49,6 @@ References
 
 .. |License| image:: https://img.shields.io/badge/licence-GNU_v3-teal.svg?style=flat&maxAge=3600
    :target: https://www.gnu.org/licenses/gpl-3.0.html
+
+.. |Coverage| image:: https://codecov.io/gh/computational-metabolomics/pmp/branch/master/graph/badge.svg
+   :target: https://codecov.io/github/computational-metabolomics/pmp?branch=master
diff --git a/codecov.yml b/codecov.yml
@@ -0,0 +1,12 @@
+comment: false
+
+coverage:
+  status:
+    project:
+      default:
+        target: auto
+        threshold: 1%
+    patch:
+      default:
+        target: auto
+        threshold: 1%