Add nearest neighbor interpolation to fill gaps (#87) #196
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| # Configuration for running tests with GitHub Actions | |
| # | |
| # NOTE: Pin actions to a specific commit to avoid having the authentication | |
| # token stolen if the Action is compromised. See the comments and links here: | |
| # https://github.com/pypa/gh-action-pypi-publish/issues/27 | |
| # | |
| name: test | |
| # Only build PRs, the main branch, and releases. Pushes to branches will only | |
| # be built when a PR is opened. This avoids duplicated buids in PRs comming | |
| # from branches in the origin repository (1 for PR and 1 for push). | |
| on: | |
| pull_request: | |
| push: | |
| branches: | |
| - main | |
| release: | |
| types: | |
| - published | |
| # Use bash by default in all jobs | |
| defaults: | |
| run: | |
| # Using "-l {0}" is necessary for conda environments to be activated | |
| # But this breaks on MacOS if using actions/setup-python: | |
| # https://github.com/actions/setup-python/issues/132 | |
| shell: bash | |
| jobs: | |
| ############################################################################# | |
| # Run tests and upload to codecov | |
| test: | |
| name: ${{ matrix.os }} python=${{ matrix.python }} dependencies=${{ matrix.dependencies }} | |
| runs-on: ${{ matrix.os }}-latest | |
| strategy: | |
| # Otherwise, the workflow would stop if a single job fails. We want to | |
| # run all of them to catch failures in different combinations. | |
| fail-fast: false | |
| matrix: | |
| os: [ubuntu, macos, windows] | |
| python: ["3.9", "3.12"] | |
| include: | |
| - python: "3.9" | |
| dependencies: oldest | |
| - python: "3.12" | |
| dependencies: latest | |
| env: | |
| REQUIREMENTS: env/requirements-build.txt env/requirements-test.txt | |
| # Used to tag codecov submissions | |
| OS: ${{ matrix.os }} | |
| PYTHON: ${{ matrix.python }} | |
| steps: | |
| # Cancel any previous run of the test job | |
| # We pin the commit hash corresponding to v0.5.0, and not pinning the tag | |
| # because we are giving full access through the github.token. | |
| - name: Cancel Previous Runs | |
| uses: styfle/cancel-workflow-action@85880fa0301c86cca9da44039ee3bb12d3bedbfa | |
| with: | |
| access_token: ${{ github.token }} | |
| # Checks-out your repository under $GITHUB_WORKSPACE | |
| - name: Checkout | |
| uses: actions/checkout@v4 | |
| with: | |
| # Need to fetch more than the last commit so that setuptools_scm can | |
| # create the correct version string. If the number of commits since | |
| # the last release is greater than this, the version still be wrong. | |
| # Increase if necessary. | |
| fetch-depth: 100 | |
| # The GitHub token is preserved by default but this job doesn't need | |
| # to be able to push to GitHub. | |
| persist-credentials: false | |
| # Need the tags so that setuptools_scm can form a valid version number | |
| - name: Fetch git tags | |
| run: git fetch origin 'refs/tags/*:refs/tags/*' | |
| - name: Setup Python | |
| uses: actions/setup-python@v5 | |
| with: | |
| python-version: ${{ matrix.python }} | |
| - name: Collect requirements | |
| run: | | |
| echo "Install Dependente to capture dependencies:" | |
| python -m pip install dependente==0.3.0 | |
| echo "" | |
| echo "Capturing run-time dependencies:" | |
| if [[ "${{ matrix.dependencies }}" == "oldest" ]]; then | |
| dependente --source install --oldest > requirements-full.txt | |
| else | |
| dependente --source install > requirements-full.txt | |
| fi | |
| echo "" | |
| echo "Capturing dependencies from:" | |
| for requirement in $REQUIREMENTS | |
| do | |
| echo " $requirement" | |
| cat $requirement >> requirements-full.txt | |
| done | |
| echo "" | |
| echo "Collected dependencies:" | |
| cat requirements-full.txt | |
| - name: Get the pip cache folder | |
| id: pip-cache | |
| run: | | |
| echo "::set-output name=dir::$(pip cache dir)" | |
| - name: Setup caching for pip packages | |
| uses: actions/cache@v4 | |
| with: | |
| path: ${{ steps.pip-cache.outputs.dir }} | |
| key: ${{ runner.os }}-pip-${{ hashFiles('requirements-full.txt') }} | |
| - name: Install requirements | |
| run: | | |
| python -m pip install --requirement requirements-full.txt | |
| - name: List installed packages | |
| run: python -m pip freeze | |
| - name: Build source and wheel distributions | |
| run: | | |
| make build | |
| echo "" | |
| echo "Generated files:" | |
| ls -lh dist/ | |
| - name: Install the package | |
| run: python -m pip install --no-deps dist/*.whl | |
| - name: Run the tests | |
| run: make test | |
| - name: Convert coverage report to XML for codecov | |
| run: coverage xml | |
| - name: Upload coverage to Codecov | |
| uses: codecov/codecov-action@v4 | |
| with: | |
| file: ./coverage.xml | |
| env_vars: OS,PYTHON | |
| # Don't mark the job as failed if the upload fails for some reason. | |
| # It does sometimes but shouldn't be the reason for running | |
| # everything again unless something else is broken. | |
| fail_ci_if_error: false | |
| env: | |
| CODECOV_TOKEN: ${{ secrets.CODECOV_TOKEN }} |