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workflows_workshop

Workflows_Nextflow_2024.ipynb is the latest workbook for the 2024 bootcmap.

Workflows_2022.ipynb is a workbook for the 2022 bootcamp session providing a high-level overview of Nextflow and Snakemake and detailing configuring them for OSCAR.

Workflows_Nextflow_2023.ipynb is an updated workbook for the 2023 bootcmap and is based on workflows.ipynb. It discusses both Nextflow and Snakemake and configuring them for OSCAR but we've added a discussion about setting up and executing a basic Nextflow workflow on OSCAR.

Workflows_Nextflow_Advanced_2023.ipynb is a workbook for our new, more advanced Nextflow session entitled Using Nextflow on OSCAR offered in our 2023 bootcamp. It discusses setting up Nextflow for OSCAR and runnning more advanced Nextflow workflows.