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+{"pageProps":{"note":{"id":"03wc0baj6uz29tazhyqcsd3","title":"2024-02-16","desc":"","updated":1708075656263,"created":1708071858095,"traitIds":["open-notebook-commons-pmallard"],"custom":{},"fname":"open-notebook.commons.pmallard.2024.02.16","type":"note","vault":{"fsPath":"vault"},"contentHash":"290209caf2fb111b078aedcf65a375f7","links":[{"type":"wiki","from":{"fname":"open-notebook.commons.pmallard.2024.02.16","id":"03wc0baj6uz29tazhyqcsd3","vaultName":"vault"},"value":"viewpoint","position":{"start":{"line":13,"column":5,"offset":285},"end":{"line":13,"column":18,"offset":298},"indent":[]},"xvault":false,"sameFile":false,"to":{"fname":"viewpoint"}}],"anchors":{"this-is-pmass-commons-lab-daily-open-notebook":{"type":"header","text":"This is PMAS's COMMONS Lab daily Open Notebook.","value":"this-is-pmass-commons-lab-daily-open-notebook","line":10,"column":0,"depth":1},"todo-today":{"type":"header","text":"Todo today","value":"todo-today","line":14,"column":0,"depth":2},"have-a-look-at-the-commons-research-discussion-forum":{"type":"header","text":"Have a look at the COMMONS research discussion forum","value":"have-a-look-at-the-commons-research-discussion-forum","line":16,"column":0,"depth":3},"daily-work-on-the-open-science-for-natural-products-research-viewpoint":{"type":"header","text":"Daily work on the Open Science for natural products research Viewpoint","value":"daily-work-on-the-open-science-for-natural-products-research-viewpoint","line":19,"column":0,"depth":3},"":{"type":"header","text":"","value":"","line":24,"column":0,"depth":3},"-1":{"type":"header","text":"","value":"-1","line":25,"column":0,"depth":3},"doing":{"type":"header","text":"Doing","value":"doing","line":27,"column":0,"depth":2},"paused":{"type":"header","text":"Paused","value":"paused","line":29,"column":0,"depth":2},"done":{"type":"header","text":"Done","value":"done","line":31,"column":0,"depth":2},"notes":{"type":"header","text":"Notes","value":"notes","line":83,"column":0,"depth":2},"todo-tomorrow-one-day--or-never":{"type":"header","text":"Todo tomorrow, one day ... or never","value":"todo-tomorrow-one-day--or-never","line":87,"column":0,"depth":2},"-2":{"type":"header","text":"","value":"-2","line":90,"column":0,"depth":3},"-3":{"type":"header","text":"","value":"-3","line":91,"column":0,"depth":3},"today-i-learned-that":{"type":"header","text":"Today I learned that","value":"today-i-learned-that","line":94,"column":0,"depth":2}},"children":[],"parent":"7cc429elsfof3nujgfdygj9","data":{}},"body":"<h1 id=\"2024-02-16\"><a aria-hidden=\"true\" class=\"anchor-heading icon-link\" href=\"#2024-02-16\"></a>2024-02-16</h1>\n<h1 id=\"this-is-pmass-commons-lab-daily-open-notebook\"><a aria-hidden=\"true\" class=\"anchor-heading icon-link\" href=\"#this-is-pmass-commons-lab-daily-open-notebook\"></a>This is PMAS's COMMONS Lab daily Open Notebook.</h1>\n<p>Today is 2024.02.16</p>\n<h2 id=\"todo-today\"><a aria-hidden=\"true\" class=\"anchor-heading icon-link\" href=\"#todo-today\"></a>Todo today</h2>\n<h3 id=\"have-a-look-at-the-commons-research-discussion-forum\"><a aria-hidden=\"true\" class=\"anchor-heading icon-link\" href=\"#have-a-look-at-the-commons-research-discussion-forum\"></a>Have a look at the COMMONS research discussion forum</h3>\n<pre><code>- https://github.com/orgs/commons-research/discussions\n</code></pre>\n<h3 id=\"daily-work-on-the-open-science-for-natural-products-research-viewpoint\"><a aria-hidden=\"true\" class=\"anchor-heading icon-link\" href=\"#daily-work-on-the-open-science-for-natural-products-research-viewpoint\"></a>Daily work on the Open Science for natural products research Viewpoint</h3>\n<p>See <a href=\"/commons-dws-public/notes/43p60vv8btyhaclugl93jok\">Viewpoint</a></p>\n<h3 id=\"\"><a aria-hidden=\"true\" class=\"anchor-heading icon-link\" href=\"#\"></a></h3>\n<h3 id=\"-1\"><a aria-hidden=\"true\" class=\"anchor-heading icon-link\" href=\"#-1\"></a></h3>\n<h2 id=\"doing\"><a aria-hidden=\"true\" class=\"anchor-heading icon-link\" href=\"#doing\"></a>Doing</h2>\n<h2 id=\"paused\"><a aria-hidden=\"true\" class=\"anchor-heading icon-link\" href=\"#paused\"></a>Paused</h2>\n<h2 id=\"done\"><a aria-hidden=\"true\" class=\"anchor-heading icon-link\" href=\"#done\"></a>Done</h2>\n<p>(shifting to the commons-open-notebook by default ...)\nExpect to find passwords to bank account and other surprises here ... #.env </p>\n<p>Assisting <a href=\"https://www.spettrometriadimassa.it/Congressi/4MSNatMed/index.html\">https://www.spettrometriadimassa.it/Congressi/4MSNatMed/index.html</a></p>\n<p>Institute of biomolecular chenmistry</p>\n<p>Director <a href=\"https://www4.na.icb.cnr.it/en/\">Institute of biomolecular chemistry</a> (Prof. ANGELO FONTANA Professore di Chimica Organica) is presenting\nMarine Nat prod chemist</p>\n<ul>\n<li><a href=\"https://www.toscanalifesciences.org/it/\">https://www.toscanalifesciences.org/it/</a></li>\n</ul>\n<p><a href=\"https://www4.na.icb.cnr.it/en/research/research-activities/nature-and-environment/\">https://www4.na.icb.cnr.it/en/research/research-activities/nature-and-environment/</a></p>\n<p>Sulfavant A\n<a href=\"https://www.unicampus.it/en/research-project/sulfavant-aa-new-marine-derived-compound-for-targeting-neuroinflammation-in-alzheimer%27s-disease/\">https://www.unicampus.it/en/research-project/sulfavant-aa-new-marine-derived-compound-for-targeting-neuroinflammation-in-alzheimer%27s-disease/</a></p>\n<p><a href=\"https://link.springer.com/article/10.1007/s00018-022-04297-z\">https://link.springer.com/article/10.1007/s00018-022-04297-z</a></p>\n<p><img src=\"/commons-dws-public/assets/images/2024-02-16-10-12-52.png\"></p>\n<p>No wikipedia nor wikidata entry for this.\n<a href=\"https://www.mdpi.com/1660-3397/15/9/288\">https://www.mdpi.com/1660-3397/15/9/288</a> (uploaded to decimer)</p>\n<p>Decimer returns GDDVJRRNJOLGDY-KCJHKMSFSA-M</p>\n<p>CCCCCCCCCCCCCCCCCC(=O)OCC(CO[C@H]1C(<a href=\"/commons-dws-public/%5BC@H%5D(C(CS(=O)(=O)%5BO-%5D)O1)O\">C@H</a>O)O)OC(=O)CCCCCCCCCCCCCCCCC</p>\n<p><a href=\"https://pubchem.ncbi.nlm.nih.gov/#query=GDDVJRRNJOLGDY-KCJHKMSFSA-M\">https://pubchem.ncbi.nlm.nih.gov/#query=GDDVJRRNJOLGDY-KCJHKMSFSA-M</a></p>\n<p>Yields no results</p>\n<p><a href=\"https://www.chemspider.com/InChI.asmx?op=SMILESToInChI\">https://www.chemspider.com/InChI.asmx?op=SMILESToInChI</a></p>\n<p>InChI=1S/C45H86O12S/c1-3-5-7-9-11-13-15-17-19-21-23-25-27-29-31-33-40(46)54-35-38(36-55-45-44(50)43(49)42(48)39(57-45)37-58(51,52)53)56-41(47)34-32-30-28-26-24-22-20-18-16-14-12-10-8-6-4-2/h38-39,42-45,48-50H,3-37H2,1-2H3,(H,51,52,53)/p-1/t38?,39?,42-,43-,44?,45+/m0/s1</p>\n<p>GDDVJRRNJOLGDY-KCJHKMSFSA-M</p>\n<h2 id=\"notes\"><a aria-hidden=\"true\" class=\"anchor-heading icon-link\" href=\"#notes\"></a>Notes</h2>\n<h2 id=\"todo-tomorrow-one-day--or-never\"><a aria-hidden=\"true\" class=\"anchor-heading icon-link\" href=\"#todo-tomorrow-one-day--or-never\"></a>Todo tomorrow, one day ... or never</h2>\n<h3 id=\"-2\"><a aria-hidden=\"true\" class=\"anchor-heading icon-link\" href=\"#-2\"></a></h3>\n<h3 id=\"-3\"><a aria-hidden=\"true\" class=\"anchor-heading icon-link\" href=\"#-3\"></a></h3>\n<h2 id=\"today-i-learned-that\"><a aria-hidden=\"true\" class=\"anchor-heading icon-link\" href=\"#today-i-learned-that\"></a>Today I learned that</h2>\n<ul>\n<li>o</li>\n</ul>","noteIndex":{"id":"QvYK9hGbCvPpEfSRYhV8j","title":"Welcome to the COMMONS Lab Open Dendron","desc":"","updated":1693056226815,"created":1630130450048,"custom":{"nav_order":0,"permalink":"/"},"fname":"root","type":"note","vault":{"fsPath":"vault"},"contentHash":"20f67df3dd870fc450a162c202c9ff41","links":[{"type":"wiki","from":{"fname":"root","id":"QvYK9hGbCvPpEfSRYhV8j","vaultName":"vault"},"value":"open-notebook.commons.setup","position":{"start":{"line":43,"column":118,"offset":1871},"end":{"line":43,"column":149,"offset":1902},"indent":[]},"xvault":false,"sameFile":false,"to":{"fname":"open-notebook.commons.setup"}}],"anchors":{"what-is-this-note":{"type":"header","text":"What is this note","value":"what-is-this-note","line":16,"column":0,"depth":2},"tutorial":{"type":"header","text":"Tutorial","value":"tutorial","line":20,"column":0,"depth":2},"dendron":{"type":"header","text":"Dendron.","value":"dendron","line":22,"column":0,"depth":3},"what-is-dendron-":{"type":"header","text":"What is Dendron ?","value":"what-is-dendron-","line":24,"column":0,"depth":4},"where-to-get-more-info-on-dendron-":{"type":"header","text":"Where to get more info on Dendron ?","value":"where-to-get-more-info-on-dendron-","line":30,"column":0,"depth":4},"concrete-steps-to-access-and-contribute-to-the-dbgi-dendron":{"type":"header","text":"Concrete steps to access and contribute to the DBGI Dendron","value":"concrete-steps-to-access-and-contribute-to-the-dbgi-dendron","line":35,"column":0,"depth":4},"questions-comments-suggestions-":{"type":"header","text":"Questions, comments, suggestions ?","value":"questions-comments-suggestions-","line":52,"column":0,"depth":2}},"children":["e4ul30admmxm9ilxfq275cq","h78qbvh1fd9bwcykmcm9uo3","6ooxuf27zzf3grb14o18qf2","tiqo5upbg6224t7i8p87iok","bdq3suiz8yriznljea2zpug","ih6vyup3yre4m9woc9ldl7k","vDTgZL9UHWqYtBFdtD3vK","69ekb2qhuwukr0jwrzy6tnw","373694o1o6ocqohko4um7c9","jldFUSJGjDf1mFH8c2yUI","2rvdf4t5qnx5hqjj29bojcc","stj9lq0lxhfuk5ntomiozz0","gvdyfgvq0z08fcfaqzmhtjo","2npxodkvs5jk6p1eksi551b","lco50o42dfeph5i5f2k981w","46d1odkovrpdi6g16992phy","s9gzk7nphtjzmpdqvk5y4vj","hpnaglyhnb48vuiniqecnqf","2cxr093kvrg4jojokwgqrbj","w75krbmkkvla3hwd66hn5bh","40po5od17ekcr1e77dluxao","4pqppog2u66rx1tkc8jy5v9","vfsp2aci6vy7kg2jsyy8tzu","ib4jmxy1x3l1r0ewe6hln4j","4789z8f1dqdh5k3nmgr1m4z","p5dszyuhj1klgje0brtv0xj","sk4m9gq7vz2t9phcxlxvqpw","43p60vv8btyhaclugl93jok","zhc9hhpaobkbo4e2votv6wr","wj0i9czxvt4v0b674nb8501","ovslc641d0h00s16tf6kl8w","59ftsVxFXXM9bB43vfKwK","nmnpsy2e1rwqnqgurogi2u6","1f8n2enh5fmq9159uitrra6","rgh4ueljhc0zencnmbnvhrm","8jgx7uotfb16vk6v2i87kec","0ugi6vnfm1o3awrzhk43hfz","oddqpuol1zxg84omwif3j37","1f12vu6k5zqiqfkdbqx6a8c","7g2o1gi2seejhyefc7zgyuz","dgghrogoxzqcnt90eebnx2k","9b0bi89jvlrx8irgiq4somv","mfl3hnihgalgd2effh297iq","w8oa59c70x6s2f4yrv86rko","tp50kllw7s3gv9h7mnj6r2g"],"parent":null,"data":{},"body":"\n![](/assets/images/allard-lab.jpg)\n\nWelcome the the COMMONS Lab Open Dendron !\n\nIn the [COMMONS Lab](https://www.unifr.ch/bio/en/groups/allard/) we intent to follow the [Open Notebook Science](https://en.wikipedia.org/wiki/Open-notebook_science) approach to document our research.\n\nFor this we use the [Dendron](https://www.dendron.so/) system as a mean to efficiently capture notes and publish them.\n\n## What is this note\n\nThis note is a succinct tutorial note aiming to get you started in the use of the COMMONS Lab Dendron.\n\n## Tutorial\n\n### Dendron. \n\n#### What is Dendron ?\n\n> Dendron is an open-source, local-first, markdown-based, note-taking tool. Think of it as a cache for everything that you care about - if you've spent more then five minutes solving a problem, you should never spent any more time solving the same exact problem.\n> \n> Dendron is a knowledge base built by and for developers and integrates natively with IDEs like VS Code and VSCodium.\n\n#### Where to get more info on Dendron ?\n\n- You can get more information in the Dendron system at the official website www.dendron.so\n- All the Dendron documentation is hosted here https://wiki.dendron.so/. It is, obviously, a Dendron itself.\n\n#### Concrete steps to access and contribute to the DBGI Dendron\n\n1. Install [VSCode](https://code.visualstudio.com/download)\n2. Install [Dendron](https://marketplace.visualstudio.com/items?itemName=dendron.dendron) from the VSCode marketplace \n3. Clone the COMMONS Dendron repo\n\n    In your terminal\n    ```\n    git clone https://github.com/commons-research/commons-dws-public.git\n    ```\n4. In VSCode open (File/Open) the cloned repository.\n5. Voila ! You should now be in the COMMONS Lab Open Dendron.\n\nFeel free to explore and contribute.\nA first, important step could be to configure VSCode so that you can easily add a daily note. See steps described at [[open-notebook.commons.setup]]\n\n\n## Questions, comments, suggestions ?\n\nFeel free to contribute here https://github.com/orgs/commons-research/discussions\n\n"},"collectionChildren":null,"customHeadContent":null,"config":{"version":5,"dev":{"enablePreviewV2":true},"commands":{"lookup":{"note":{"selectionMode":"extract","confirmVaultOnCreate":false,"leaveTrace":false,"bubbleUpCreateNew":true,"vaultSelectionModeOnCreate":"smart","fuzzThreshold":0.2}},"insertNote":{"initialValue":"templates"},"insertNoteLink":{"aliasMode":"none","enableMultiSelect":false},"insertNoteIndex":{"enableMarker":false},"randomNote":{},"copyNoteLink":{"aliasMode":"title"},"templateHierarchy":"template"},"workspace":{"vaults":[{"fsPath":"vault"}],"journal":{"dailyDomain":"daily","name":"journal","dateFormat":"y.MM.dd","addBehavior":"childOfDomain"},"scratch":{"name":"scratch","dateFormat":"y.MM.dd.HHmmss","addBehavior":"asOwnDomain"},"graph":{"zoomSpeed":1,"createStub":false},"enableAutoCreateOnDefinition":false,"enableXVaultWikiLink":false,"enableRemoteVaultInit":true,"workspaceVaultSyncMode":"noCommit","enableAutoFoldFrontmatter":false,"maxPreviewsCached":10,"maxNoteLength":204800,"task":{"name":"","dateFormat":"","addBehavior":"childOfCurrent","statusSymbols":{"":" ","wip":"w","done":"x","assigned":"a","moved":"m","blocked":"b","delegated":"l","dropped":"d","pending":"y"},"prioritySymbols":{"H":"high","M":"medium","L":"low"},"todoIntegration":false,"createTaskSelectionType":"selection2link","taskCompleteStatus":["done","x"]},"enableUserTags":true,"enableHashTags":true,"dendronVersion":"0.112.0","enableEditorDecorations":true,"enableFullHierarchyNoteTitle":false},"preview":{"enableFMTitle":true,"enableNoteTitleForLink":true,"enableMermaid":true,"enablePrettyRefs":true,"enableKatex":true,"automaticallyShowPreview":false,"enableFrontmatterTags":true,"enableHashesForFMTags":false},"publishing":{"enableFMTitle":true,"enableNoteTitleForLink":true,"enableMermaid":true,"enablePrettyRefs":true,"enableKatex":true,"assetsPrefix":"/commons-dws-public","copyAssets":true,"siteHierarchies":["root"],"enableSiteLastModified":true,"siteRootDir":"docs","siteUrl":"https://commons-research.github.io","enableFrontmatterTags":true,"enableHashesForFMTags":false,"enableRandomlyColoredTags":true,"duplicateNoteBehavior":{"action":"useVault","payload":["vault"]},"writeStubs":false,"seo":{"title":"COMMONS DWS Public","description":"Personal knowledge space"},"github":{"enableEditLink":true,"editLinkText":"Click here to edit this page on Github !","editBranch":"main","editViewMode":"edit","editRepository":"https://github.com/commons-research/commons-dws-public"},"enablePrettyLinks":true,"enableTaskNotes":true,"siteFaviconPath":"favicon.ico","siteIndex":"root","searchMode":"lookup"}}},"__N_SSG":true}