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Merge pull request #263 from coderefinery/enrico-environments
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example on how to build singularity container
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samumantha authored Mar 19, 2024
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Expand Up @@ -246,7 +246,45 @@ package repositories.
`````
``````

````{exercise} (optional) Containers-2: Explore two really useful Docker images

````{exercise} (optional) Containers-2: Installing the impossible.
When you are missing privileges for installing certain software tools, containers can come handy.
Here we build a Singularity/Apptainer container for installing `cowsay` and `lolcat` Linux programs.
1. Make sure you have apptainer installed:
```console
$ apptainer --version
```
2. Make sure you set the apptainer cache and temporary folders.
```console
$ mkdir ./cache/
$ mkdir ./temp/
$ export APPTAINER_CACHEDIR="./cache/"
$ export APPTAINER_TMPDIR="./temp/"
```
3. Build the container from the following definition file above.
```console
apptainer build cowsay.sif cowsay.def
```
4. Let's test the container by entering into it with a shell terminal
```console
$ apptainer shell cowsay.sif
```
5. We can verify the installation.
```console
$ cowsay "Hello world!"|lolcat
```
````



````{exercise} (optional) Containers-3: Explore two really useful Docker images
You can try the below if you have Docker installed. If you have
Singularity/Apptainer and not Docker, the goal of the exercise can be to run
the Docker containers through Singularity/Apptainer.
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