Skip to content
New issue

Have a question about this project? Sign up for a free GitHub account to open an issue and contact its maintainers and the community.

By clicking “Sign up for GitHub”, you agree to our terms of service and privacy statement. We’ll occasionally send you account related emails.

Already on GitHub? Sign in to your account

Clint workshop #2

Merged
merged 5 commits into from
Oct 13, 2023
Merged
Show file tree
Hide file tree
Changes from all commits
Commits
File filter

Filter by extension

Filter by extension


Conversations
Failed to load comments.
Loading
Jump to
Jump to file
Failed to load files.
Loading
Diff view
Diff view
5 changes: 5 additions & 0 deletions environment.yml
Original file line number Diff line number Diff line change
Expand Up @@ -9,5 +9,10 @@ dependencies:
- jinja2
- click
- psutil
- intake
- intake-esm
- pydantic<2
- requests
- aiohttp
# tests
- pytest
5 changes: 5 additions & 0 deletions requirements.txt
Original file line number Diff line number Diff line change
Expand Up @@ -2,3 +2,8 @@ click
jinja2
psutil
pywps>=4.5.1,<4.6
intake
intake-esm
pydantic<2
requests
aiohttp
2 changes: 2 additions & 0 deletions shearwater/processes/__init__.py
Original file line number Diff line number Diff line change
@@ -1,5 +1,7 @@
from .wps_say_hello import SayHello
from .wps_cyclone import Cyclone

processes = [
SayHello(),
Cyclone(),
]
78 changes: 78 additions & 0 deletions shearwater/processes/wps_cyclone.py
Original file line number Diff line number Diff line change
@@ -0,0 +1,78 @@
from pywps import Process, LiteralInput, LiteralOutput
from pywps.app.Common import Metadata
# from datetime import datetime

import intake

import logging
LOGGER = logging.getLogger("PYWPS")


class Cyclone(Process):
"""A process to forecast tropical cyclone activities."""
def __init__(self):
inputs = [
LiteralInput('model', 'Model name',
abstract='trained ML model ...: CNN, Unet',
# keywords=['name', 'firstname'],
default='CNN',
# allowed_values=['CNN', 'Unet'],
data_type='string'),
LiteralInput('start_day', 'Start Day',
abstract='2023-10-12',
# keywords=['name', 'firstname'],
# default=f"{datetime.today()}",
data_type='string'),
]
outputs = [
LiteralOutput('output', 'Cyclone activity forecast',
abstract='netcdf',
# keywords=['output', 'result', 'response'],
data_type='string'),
LiteralOutput('output_csv', 'Cyclone activity forecast',
abstract='csv file',
# keywords=['output', 'result', 'response'],
data_type='string')
]

super(Cyclone, self).__init__(
self._handler,
identifier='cyclone',
title='Cyclone',
abstract='A process to forecast tropical cyclone activities.',
# keywords=['hello', 'demo'],
metadata=[
Metadata('PyWPS', 'https://pywps.org/'),
],
version='0.1',
inputs=inputs,
outputs=outputs,
store_supported=True,
status_supported=True
)

@staticmethod
def _handler(request, response):
LOGGER.info("running cyclone ...")

master_catalog = intake.open_catalog(["https://gitlab.dkrz.de/data-infrastructure-services/intake-esm/-/raw/master/esm-collections/cloud-access/dkrz_catalog.yaml"]) # noqa
# master_catalog = intake.open_catalog('/pool/data/Catalogs/dkrz_catalog.yaml')
era5_catalog = master_catalog['dkrz_era5_disk']

query = {
'era_id': 'ET',
'level_type': 'surface',
'table_id': 128,
# 'frequency':'hourly',
'code': 34,
'dataType': 'an',
'validation_date': '2023-06-27',
}

my_catalog = era5_catalog.search(**query)
# my_catalog.df

era_path = my_catalog.df['uri'].iloc[0]
response.outputs['output'].data = f'netcdf {era_path}'
response.outputs['output_csv'].data = 'csv ' + request.inputs['model'][0].data
return response
1 change: 1 addition & 0 deletions tests/test_wps_caps.py
Original file line number Diff line number Diff line change
Expand Up @@ -12,5 +12,6 @@ def test_wps_caps():
'/wps:Process'
'/ows:Identifier')
assert sorted(names.split()) == [
'cyclone',
'hello',
]