v1.6.0

1.6.0 (2025-01-22)

Features

• rename atlas completed status to oc endorsed (#564) (#566) (f3f3689)
• rename atlas status value COMPLETE to OC_ENDORSED (#569) (#570) (ff95529)
• update golden sheet and integration lead columns (#565) (#568) (16be36c)

v1.5.0

1.5.0 (2025-01-22)

Features

• add metadata spreadsheet link to atlas source dataset list (#549) (#559) (250f6a9)
• added metadata specification column (#547) (#552) (2bd70a0)
• added roadmap grouping by default (#546) (#551) (f250dd1)

Chores

• renamed metadata spreadsheet (#550) (#556) (66b46f1)

v1.4.0

1.4.0 (2025-01-18)

Features

• removed confidentiality notice (#548) (#555) (b96119a)

Build System

• checkout full history and tags during build (#523) (#558) (2e34390)

v1.3.0

1.3.0 (2025-01-17)

Features

• remove cellxgene link to make room in atlas source datasets table (#542) (#544) (2dbee59)

Build System

• checkout latest tag during build (#523) (#553) (a417b1e)
• fetch latest tag only during build (#523) (#554) (7409bb9)

v1.2.0

1.2.0 (2025-01-14)

Features

• add additional grouping options for tasks and remove default grouping (#538) (#541) (7912ca9)
• add download buttons to atlas source datasets (#526) (#535) (12dc308)
• allow grouping atlases and add grouping to roadmap filter (#519) (#527) (74fe0cc)
• allow grouping users (#520) (#528) (c4d8e82)
• allow setting past target completions (#534) (#536) (ac39388)
• link atlas source dataset publication and study and update title label (#524) (#531) (2b86d22)
• relabel source study title column (#525) (#529) (8367778)
• show per-system ingestion task counts in atlas list rather than all tasks (#539) (#543) (b6b2c9e)
• update atlas roadmap filter to sort by status and name (#537) (#540) (60ef3fd)

Tests

• restore user-profile mock to fix tests (#532) (#533) (923f221)

v1.1.0

1.1.0 (2025-01-07)

Features

• add atlas source dataset detail page (#489) (#504) (d08f22b)
• add cellxgene collection id to atlas forms (#484) (#486) (a36d125)
• add doi input to atlas forms (#485) (#497) (168d66f)
• add metadata specification field to atlas edit form (#488) (#499) (aab4f67)
• add publication column to atlas source datasets list and make related adjustments (#490) (#501) (6d51232)
• add release please to automate releases (#435) (#446) (7642198)
• add source dataset count to atlas list (#494) (#507) (bb32b0e)
• add status input to atlas edit form (#495) (#509) (0a9ae14)
• add title to atlas cellxgene collection input (#505) (#506) (2784028)
• add version info to footer (#459) (#460) (04d5089)
• allow adding/removing integration leads (#456) (#463) (42e82db)
• allow linking source datasets to atlases (#467) (#479) (73bd56a)
• create account automatically when unregistered user logs in (#464) (#466) (8a9bff3)
• implement group by for lists (#414) (#500) (d03023f)
• include entity lists in breadcrumbs (#471) (#474) (36f6548)
• make atlas wave and integration lead columns hidden by default (#491) (#508) (755091a)
• option to add row count on tables (#415) (#465) (ce461e0)
• rename source study source datasets to "datasets" in ui (#470) (#473) (16cd346)
• revert label from "Deadline" to "Target Completion" (#512) (#518) (b0dd4ee)
• set version environment variables during builds (#521) (#522) (dfa07a9)
• update findable-ui to latest v21.0.0 (#516) (#517) (c7acf5f)

Bug Fixes

• add venv to pretier ignore (#447) (#449) (d47a1ad)
• avoid error when saving published source study (#496) (#510) (c1a152c)
• disabled integration lead buttons when user doesn't have edit access (#513) (#514) (9d2a0a9)
• resolve error when searching disabled filter (#493) (#498) (5e081af)
• simplify release please config and remove pat (#452) (#453) (b74860e)

Chores

• add content commit type to commitlint config (#454) (#455) (88030bd)
• removed the 'no.' after 'DOI no.' (#469) (#480) (0561003)
• updated findable-ui to latest v20.0.0 (#511) (#515) (4d719f4)
• upgrade findable-ui to 14.0.0 (#431) (#450) (797a445)
• upgrade findable-ui to 15.0.0 (#457) (#458) (eac0e69)

Content

• replace "requesting access" page with "requesting elevated permissions" (#475) (#477) (14fd3a4)

v1.0.0

What's Changed

• chore: initial setup of dependencies and checks (#2) by @hunterckx in #4
• feat: create initial app with atlas entity (#3) by @hunterckx in #5
• feat: add lung v1 atlas and associated data (#6) by @hunterckx in #12
• feat: update environment definitions (#13) by @hunterckx in #24
• Deploy script update by @NoopDog in #25
• feat: add download to all tables (#15) by @frano-m in #26
• feat: add "in cellxgene" column determined by doi matches (#16) by @hunterckx in #27
• feat: add "is published" column (#17) by @hunterckx in #28
• feat: add "in hca data repository" column (#18) by @hunterckx in #29
• feat: configure Google login (#11) by @frano-m in #19
• feat: add "cap link" and "in cap" fields (#20) by @hunterckx in #30
• feat: configure atlas detail page (#21) by @frano-m in #31
• Invalidate CF on deploys by @alexfomin in #33
• Fix CF invalidation step by @alexfomin in #34
• fix: use hca link only if projectId exists and fallback to publicationUrl (#36) by @hunterckx in #37
• fix: account for different doi formats in doi comparison (#38) by @hunterckx in #39
• feat: find missing hca project ids by matching doi (#22) by @hunterckx in #35
• feat: get user identity from authorization token (#32) by @hunterckx in #42
• Noopdog/40 user table by @NoopDog in #41
• test: use separate database for tests (#45) by @hunterckx in #47
• feat: create minimal atlas backend and form (#43) by @hunterckx in #49
• feat: rename short name to focus and replace atlas column with name (#51) by @hunterckx in #53
• feat: create guides stub (#48) by @frano-m in #55
• feat: add table, api, and basic form for source datasets (#52) by @hunterckx in #57
• feat: update create form ui (#54) by @frano-m in #58
• feat: updated edit atlas ui (#59) by @frano-m in #66
• feat: add source datasets page (#69) by @frano-m in #71
• feat: update create source datasets ui (#68) by @frano-m in #72
• feat: configure inactivity logut and notice (#50) by @frano-m in #73
• feat: add back end for PUT request from atlas edit form (#67) by @hunterckx in #74
• feat: add /api/atlases/[id]/source-datasets route (#70) by @hunterckx in #77
• feat: update buttons on edit atlas form (#76) by @frano-m in #78
• feat: update shape of atlases returned from GET apis (#75) by @hunterckx in #82
• refactor: rename focus to shortName (#64) by @hunterckx in #83
• feat: use source datasets api on source datasets list (#80) by @frano-m in #84
• feat: add wave field (#62) by @hunterckx in #87
• feat: change wave to be a string and be initially unspecified on form (#62) by @hunterckx in #88
• feat: add github link to header (#90) by @frano-m in #93
• feat: require that dois be syntactically valid (#85) by @hunterckx in #92
• feat: add integration lead to create and edit apis (#63) by @hunterckx in #95
• feat: update new and edit atlas ui with integration lead section (#89) by @frano-m in #100
• feat: query hca to associate dois with projects (#81) by @hunterckx in #96
• Add latest tag for AppRunner deploys by @alexfomin in #104
• feat: update edit source datasets ui general information section for published (#79) by @frano-m in #102
• feat: use consistent entity models in api responses (#105) by @hunterckx in #107
• fix: remove password logging (#106) by @NoopDog in #108
• feat: pull db creds from environment (#116) by @NoopDog in #117
• fix: update user to username (#116) by @NoopDog in #118
• feat: edit atlases should use the edit api response to populate the edit page (#101) by @frano-m in #114
• feat: implement "discard/save" header for edit atalas and source-data set forms (#110) by @frano-m in #119
• feat: add identifiers (partial) section to source datasets edit page (#109) by @frano-m in #120
• chore: update to use @databiosphere/findable-ui (#121) by @frano-m in #122
• fix: revert session timeout (#121) by @frano-m in #123
• Prod deployment workflow by @alexfomin in #125
• feat: add prod authentication config (#126) by @frano-m in #127
• feat: validate crossref responses and give preprints default journal value "Preprint" (#86) by @hunterckx in #124
• feat: allow doi urls with http or no protocol (#112) by @hunterckx in #129
• feat: query cellxgene to match collections with source datasets (#99) by @hunterckx in #128
• feat: match using both preprint and publication dois (#113) by @hunterckx in #132
• feat: validate that integration lead email is an email address (#135) by @hunterckx in #137
• feat: ask for login on the atlases page if the user is not logged in (#136) by @frano-m in #141
• feat: add logging and retries to hca/cellxgene refreshes (#140) by @hunterckx in #143
• fix: remove push to ecs on dev build (#145) by @NoopDog in #146
• feat: add backend support for unpublished source datasets (#131) by @hunterckx in #142
• feat: add /api/me endpoint (#144) by @hunterckx in #148
• feat: create/edit unpublished source datasets ui (#130) by @frano-m in #149
• feat: use existing dataset when creating a dataset with an already-used doi (#139, #152) by @hunterckx in #156
• fix: make help and documentation github link open in new tab (#153) by @frano-m in #160
• feat: update detail pages with conditional rendering (#158) by @frano-m in #159
• feat: allow contact email to be omitted (#150) by @hunterckx in #157
• feat: updates to rules for discard and save header (#133) by @frano-m in #169
• feat: support stakeholder and unregistered roles on backend (#164) by @hunterckx in #168
• feat: show api errors in console and send stack trace in response (#170) by @hunterckx in #172
• fix: hardcode google profile endpoint (#171) by @hunterckx in #173
• feat: add source dataset delete api (#111) by @hunterckx in #178
• feat: add title to info saved by refresh services (#176) by @hunterckx in #186
• feat: only show the create, edit buttons and forms if the user is a...