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scripts for pooled genome-wide CRISPRi screen in V. natriegens

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Dependencies:

  • python 3.6.5
  • Biopython 1.7
  • matplotlib 2.1.1
  • seaborn 0.8.1
  • pandas 0.22.0
  • numpy 1.14.0
  • cutadapt 1.16

See ./gRNA_selection for instructions on selecting gRNAs for use with Sp-Cas9/Sp-dCas9

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scripts for pooled genome-wide CRISPRi screen in V. natriegens

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