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Update URLs to HTTPS #148

Update URLs to HTTPS

Update URLs to HTTPS #148

Workflow file for this run

name: Run unit tests
on: [push, pull_request]
jobs:
build:
runs-on: ubuntu-latest
steps:
- name: Check out repo
uses: actions/checkout@v2
- uses: actions/cache@v2
with:
path: ~/.cache/pip
key: ${{ runner.os }}-pip-${{ hashFiles('**/setup.py') }}
restore-keys: |
${{ runner.os }}-pip-
- name: Set up Python
uses: actions/setup-python@v2
with:
python-version: 3.8
- name: Install without INDRA
run: |
pip install nose coverage
pip install .
- name: Run unit tests
run: nosetests genewalk/tests -v
- name: Install with INDRA
run: |
pip install .[indra]
- name: Run unit tests again
run: nosetests genewalk -v --with-coverage --cover-inclusive --cover-package=genewalk
- name: Run CLI smoke tests
run: |
genewalk --project test_custom_genes --genes genewalk/tests/resources/custom_gene_list.txt --id_type custom --network_source sif_annot --network_file genewalk/tests/resources/test_sif_custom.sif --base_folder ~/genewalk/.test