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SIGA subprograms

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chungongyu edited this page Oct 18, 2018 · 2 revisions

The major subcommands of SIGA are:

  • preprocess - Prepare a set of sequence reads for assembly
  • index - Build the FM index for a set of sequence reads
  • overlap - Find overlaps between reads to construct a string graph
  • correct - Correct base calling errors in a set of reads
  • assemble - Construct contigs from a string graph

Detail usage information for each command is printed from the --help option. For example, this command will print the options for the index subprogram:

  siga index --help
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