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| Original file line number | Diff line number | Diff line change |
|---|---|---|
| @@ -1,37 +1,37 @@ | ||
| function SS_SetupRunInfo( ks , kToUse , op_km_repeats , ts_km_repeats , ... | ||
| inMatFileName , outTxtFileName , corr_dist_threshold) | ||
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| if nargin < 1 | ||
| ks = [5,7,10,20:20:100,200,500,1000]; | ||
| end | ||
| if nargin < 2 | ||
| kToUse = 40; | ||
| end | ||
| if nargin < 3 | ||
| op_km_repeats = 50; | ||
| end | ||
| if nargin < 4 | ||
| ts_km_repeats = 500; | ||
| end | ||
| if nargin < 5 | ||
| inMatFileName = 'HCTSA_new_data'; | ||
| end | ||
| if nargin < 6 | ||
| outTxtFileName = 'cluster_info.txt'; | ||
| end | ||
| if nargin < 7 | ||
| corr_dist_threshold = 0.2; | ||
| end | ||
|
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| kIdx = find(ks == kToUse); | ||
| if isempty(kIdx) | ||
| fprintf('Could not find K = %i in ks - setting kToUse to %i',... | ||
| kToUse , ks(length(ks))); | ||
| kIdx = length(ks); | ||
| end | ||
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| save('run_options.mat','ks','kIdx','op_km_repeats','ts_km_repeats',... | ||
| 'inMatFileName','outTxtFileName','corr_dist_threshold'); | ||
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||
| end | ||
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| function SS_SetupRunInfo( ks , kToUse , op_km_repeats , ts_km_repeats , ... | ||
| inMatFileName , outTxtFileName , corr_dist_threshold) | ||
|
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||
| if ~exist('ks','var') | ||
| ks = [5,7,10,20:20:100,200,500,1000]; | ||
| end | ||
| if ~exist('kToUse','var') | ||
| kToUse = 40; | ||
| end | ||
| if ~exist('op_km_repeats','var') | ||
| op_km_repeats = 50; | ||
| end | ||
| if ~exist('ts_km_repeats','var') | ||
| ts_km_repeats = 500; | ||
| end | ||
| if ~exist('inMatFileName','var') | ||
| inMatFileName = 'HCTSA_new_data'; | ||
| end | ||
| if ~exist('outTxtFileName','var') | ||
| outTxtFileName = 'cluster_info.txt'; | ||
| end | ||
| if ~exist('corr_dist_threshold','var') | ||
| corr_dist_threshold = 0.2; | ||
| end | ||
|
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||
| kIdx = find(ks == kToUse); | ||
| if isempty(kIdx) | ||
| fprintf('Could not find K = %i in ks - setting kToUse to %i',... | ||
| kToUse , ks(length(ks))); | ||
| kIdx = length(ks); | ||
| end | ||
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||
| save('run_options.mat','ks','kIdx','op_km_repeats','ts_km_repeats',... | ||
| 'inMatFileName','outTxtFileName','corr_dist_threshold'); | ||
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||
| end | ||
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