perform appendectomy

baseline/experiment_analysis/experiment_analysis.ipynb

@@ -2378,12 +2378,12 @@
     "    latex_table = unique_model_types_df.to_latex(index=False, escape=False)\n",
     "\n",
     "    with open(path, \"w\") as file:\n",
-    "        file.write(\"\\\\begin{table*}[htbp]\\n\")\n",
+    "        file.write(\"\\\\begin{table}[!htb]\\n\")\n",
     "        file.write(\"\\\\centering\\n\")\n",
     "        file.write(latex_table)\n",
     "        file.write(\"\\\\caption{Overview of model types for \\\\ce{\" + oxide_name + \"} oxide}\\n\")\n",
     "        file.write(\"\\\\label{tab:\" + oxide + \"_overview}\\n\")\n",
-    "        file.write(\"\\\\end{table*}\\n\")\n"
+    "        file.write(\"\\\\end{table}\\n\")\n"
    ]
   },
   {
@@ -4963,9 +4963,7 @@
     "sns.boxplot(x='params.model_type', y='metrics.std_dev_cv', data=filtered_runs_target)\n",
     "plt.title(f'{analysis_target}: Standard Deviation of Errors (CV) by Model Type')\n",
     "plt.ylabel('Standard Deviation of Errors (CV)')\n",
-    "plt.show()\n",
-    "\n",
-    "\n"
+    "plt.show()\n"
    ]
   },
   {
@@ -5233,9 +5231,7 @@
     "    for p in top_configurations.patches:\n",
     "        width = p.get_width()\n",
     "        plt.text(width + 0.01, p.get_y()+0.2 + p.get_height() / 2, f'{width:.2f}', ha='left', va='center')\n",
-    "    plt.show()\n",
-    "\n",
-    "\n"
+    "    plt.show()\n"
    ]
   },
   {

report_thesis/src/sections/appendix/index.tex

@@ -3,14 +3,14 @@ \section*{Appendix}
 \addcontentsline{toc}{section}{Appendix}
 
 \subsection{Web-Based Platform for Data Partitioning Evaluation}\label{subsec:web_platform}
-
-\begin{figure*}
+\begin{figure}[!htb]
     \centering
-    \includegraphics[width=0.7\textwidth]{images/web_platform.png}
+    \includegraphics[width=0.585\textwidth]{images/web_platform.png}
     \caption{Web-based platform used to determine the optimal value of $p$ for the data partitioning algorithm.}
     \label{fig:web_platform}
-\end{figure*}
+\end{figure}
 
+\newpage
 \FloatBarrier
 
 \subsection{Cross-Validation Fold Plots for Major Oxides}\label{subsec:cv_plots}
@@ -19,39 +19,39 @@ \subsection{Cross-Validation Fold Plots for Major Oxides}\label{subsec:cv_plots}
 \foreach \oxide in {SiO2, TiO2, Al2O3, FeOT, MgO, CaO, Na2O, K2O} {
     \subsubsection{\oxide}
 
-    \begin{figure*}
+    \begin{figure}[!htb]
         \centering
         \includegraphics[width=\textwidth]{images/\oxide/histogram_grid_plot.png}
         \caption{Histogram and \gls{kde} of \ce{\oxide} distribution in each fold. The y-axis represents the count of samples per bin, and the x-axis represents \ce{\oxide} concentration. The notation in the legend indicates the amount of instances in the training/validation sets.}
         \label{fig:histogram_grid_plot_\oxide}
-    \end{figure*}
+    \end{figure}
 
-    \begin{figure*}
+    \begin{figure}[!htb]
         \centering
         \includegraphics[width=\textwidth]{images/\oxide/histogram_kde_plot.png}
         \caption{Combined Histogram and \gls{kde} of \ce{\oxide} distribution in each fold. The y-axis represents the count of samples per bin, and the x-axis represents \ce{\oxide} concentration. The notation in the legend indicates the amount of instances in the training/validation sets.}
         \label{fig:histogram_kde_plot_\oxide}
-    \end{figure*}
+    \end{figure}
 
-    \begin{figure*}
+    \begin{figure}[!htb]
         \centering
         \includegraphics[width=\textwidth]{images/\oxide/original_and_post_fold.png}
         \caption{Distribution of \ce{\oxide} concentrations before and after fold assignment. The left plot shows the original distribution of \ce{\oxide}, while the right plot shows the distribution with folds assigned, color-coded to indicate the different folds.}
         \label{fig:original_and_post_fold_plot_\oxide}
-    \end{figure*}
+    \end{figure}
 
-    \begin{figure*}
+    \begin{figure}[!htb]
         \centering
         \includegraphics[width=\textwidth]{images/\oxide/distribution_plot.png}
         \caption{Distribution of \ce{\oxide} concentrations across cross-validation folds, training set, test set, and the entire dataset. The mean and standard deviation statistics for each partition are indicated figure.}
         \label{fig:distribution_plot_\oxide}
-    \end{figure*}
+    \end{figure}
 }
 
 \FloatBarrier
 
 \subsection{Initial Experiment: Model Hyperparameters}\label{subsec:initial_experiment_hyperparameters}
-\begin{table*}
+\begin{table}[!htb]
 \centering
 \begin{tabular}{@{}llp{0.5\textwidth}@{}}
 \toprule
@@ -104,11 +104,11 @@ \subsection{Initial Experiment: Model Hyperparameters}\label{subsec:initial_expe
 \end{tabular}
 \caption{Explictly set hyperparameters for the \gls{pls}, \gls{svr}, ridge, \gls{lasso}, \gls{enet}, \gls{rf}, and \gls{etr} models. When not explicitly set, the default hyperparameters provided by the libraries listed in Section~\ref{sec:experimental_setup} are used.}
 \label{tab:combined_hyperparameters}
-\end{table*}
+\end{table}
 
 \FloatBarrier
 
-\begin{table*}
+\begin{table}[!htb]
 \centering
 \begin{tabular}{@{}llp{0.5\textwidth}@{}}
 \toprule
@@ -151,11 +151,11 @@ \subsection{Initial Experiment: Model Hyperparameters}\label{subsec:initial_expe
 \end{tabular}
 \caption{Explictly set hyperparameters for the \gls{gbr} and \gls{xgboost} models. When not explicitly set, the default hyperparameters provided by the libraries listed in Section~\ref{sec:experimental_setup} are used. The \gls{ngboost} model does not have any explicitly set hyperparameters.}
 \label{tab:combined_hyperparameters}
-\end{table*}
+\end{table}
 
 \FloatBarrier
 
-\begin{table*}
+\begin{table}[!htb]
   \centering
   \begin{tabular}{lll}
     \toprule
@@ -175,9 +175,11 @@ \subsection{Initial Experiment: Model Hyperparameters}\label{subsec:initial_expe
   \end{tabular}
   \caption{Summary of the Neural Network Architecture}
   \label{tab:nn_architecture}
-\end{table*}
+\end{table}
+
+\FloatBarrier
 
-\begin{table*}
+\begin{table}[!htb]
   \centering
   \begin{tabular}{lll}
     \toprule
@@ -211,10 +213,12 @@ \subsection{Initial Experiment: Model Hyperparameters}\label{subsec:initial_expe
   \end{tabular}
   \caption{Summary of the Convolutional Neural Network Architecture}
   \label{tab:cnn_architecture}
-\end{table*}
+\end{table}
 
 \FloatBarrier
 
+\clearpage
+
 \subsection{Overview of best performing model configurations}\label{subsec:best_model_configurations}
 \input{sections/appendix/tables/SiO2_overview.tex}
 \input{sections/appendix/tables/TiO2_overview.tex}
@@ -224,5 +228,3 @@ \subsection{Overview of best performing model configurations}\label{subsec:best_
 \input{sections/appendix/tables/CaO_overview.tex}
 \input{sections/appendix/tables/Na2O_overview.tex}
 \input{sections/appendix/tables/K2O_overview.tex}
-
-\FloatBarrier

report_thesis/src/sections/appendix/tables/Al2O3_overview.tex

@@ -1,4 +1,4 @@
-\begin{table*}
+\begin{table}[!htb]
 \centering
 \begin{tabular}{llllllll}
 \toprule
@@ -18,4 +18,4 @@
 \end{tabular}
 \caption{Overview of model types for \ce{Al2O3} oxide}
 \label{tab:Al2O3_overview}
-\end{table*}
+\end{table}

report_thesis/src/sections/appendix/tables/CaO_overview.tex

@@ -1,4 +1,4 @@
-\begin{table*}
+\begin{table}[!htb]
 \centering
 \begin{tabular}{llllllll}
 \toprule
@@ -18,4 +18,4 @@
 \end{tabular}
 \caption{Overview of model types for \ce{CaO} oxide}
 \label{tab:CaO_overview}
-\end{table*}
+\end{table}

report_thesis/src/sections/appendix/tables/FeOT_overview.tex

@@ -1,4 +1,4 @@
-\begin{table*}
+\begin{table}[!htb]
 \centering
 \begin{tabular}{llllllll}
 \toprule
@@ -18,4 +18,4 @@
 \end{tabular}
 \caption{Overview of model types for \ce{FeO_T} oxide}
 \label{tab:FeOT_overview}
-\end{table*}
+\end{table}

report_thesis/src/sections/appendix/tables/K2O_overview.tex

@@ -1,4 +1,4 @@
-\begin{table*}
+\begin{table}[!htb]
 \centering
 \begin{tabular}{llllllll}
 \toprule
@@ -18,4 +18,4 @@
 \end{tabular}
 \caption{Overview of model types for \ce{K2O} oxide}
 \label{tab:K2O_overview}
-\end{table*}
+\end{table}

report_thesis/src/sections/appendix/tables/MgO_overview.tex

@@ -1,4 +1,4 @@
-\begin{table*}
+\begin{table}[!htb]
 \centering
 \begin{tabular}{llllllll}
 \toprule
@@ -18,4 +18,4 @@
 \end{tabular}
 \caption{Overview of model types for \ce{MgO} oxide}
 \label{tab:MgO_overview}
-\end{table*}
+\end{table}

report_thesis/src/sections/appendix/tables/Na2O_overview.tex

@@ -1,4 +1,4 @@
-\begin{table*}
+\begin{table}[!htb]
 \centering
 \begin{tabular}{llllllll}
 \toprule
@@ -18,4 +18,4 @@
 \end{tabular}
 \caption{Overview of model types for \ce{Na2O} oxide}
 \label{tab:Na2O_overview}
-\end{table*}
+\end{table}

report_thesis/src/sections/appendix/tables/SiO2_overview.tex

@@ -1,4 +1,4 @@
-\begin{table*}
+\begin{table}[!htb]
 \centering
 \begin{tabular}{llllllll}
 \toprule
@@ -18,4 +18,4 @@
 \end{tabular}
 \caption{Overview of model types for \ce{SiO2} oxide}
 \label{tab:SiO2_overview}
-\end{table*}
+\end{table}

report_thesis/src/sections/appendix/tables/TiO2_overview.tex

@@ -1,4 +1,4 @@
-\begin{table*}
+\begin{table}[!htb]
 \centering
 \begin{tabular}{llllllll}
 \toprule
@@ -18,4 +18,4 @@
 \end{tabular}
 \caption{Overview of model types for \ce{TiO2} oxide}
 \label{tab:TiO2_overview}
-\end{table*}
+\end{table}