[pre-commit.ci] pre-commit autoupdate #545
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| name: Conda | |
| on: | |
| push: | |
| branches: | |
| - main | |
| pull_request: | |
| branches: | |
| - main | |
| release: | |
| workflow_dispatch: | |
| inputs: | |
| reason: | |
| description: Reason for the workflow dispatch. | |
| required: true | |
| jobs: | |
| build: | |
| runs-on: ${{ matrix.os }} | |
| defaults: | |
| run: | |
| shell: bash -l {0} | |
| strategy: | |
| matrix: | |
| os: ["ubuntu-latest", "windows-latest"] | |
| max-parallel: 5 | |
| env: | |
| FAKE_HISEQ: 1 | |
| steps: | |
| - uses: actions/checkout@v2 | |
| - name: Cache conda | |
| uses: actions/cache@v2 | |
| env: | |
| # Increase this value to reset cache if etc/example-environment.yml has not changed | |
| CACHE_NUMBER: 0 | |
| with: | |
| path: ~/conda_pkgs_dir | |
| key: ${{ runner.os }}-conda-${{ env.CACHE_NUMBER }}-${{ hashFiles('.github/ci_env.yml') }}-${{ hashFiles('conda-lock.yml') }} | |
| - uses: conda-incubator/setup-miniconda@v2 | |
| with: | |
| miniforge-version: latest | |
| environment-file: .github/ci_env.yml | |
| activate-environment: pyseq | |
| use-only-tar-bz2: true # IMPORTANT: This needs to be set for caching to work properly! | |
| - name: Update env with conda | |
| run: | | |
| conda-lock install -n pyseq conda-lock.yml | |
| conda env update -f environment-web.yml | |
| - name: Install with pip | |
| run: | | |
| pip install . | |
| # - name: Type check with Pyright | |
| # run: | | |
| # npm i -g pyright | |
| # pyright pyseq2 | |
| - name: Test with Pytest | |
| run: | | |
| pytest -rP | |
| # - name: Debug with tmate | |
| # uses: mxschmitt/action-tmate@v3 | |
| - name: Build docs | |
| if: ${{ matrix.os == 'ubuntu-latest'}} | |
| run: | | |
| conda install mkdocs mkdocs-material | |
| pip install mkdocstrings[python] mkdocs-git-revision-date-localized-plugin | |
| mkdocs build | |
| - name: Deploy docs | |
| uses: peaceiris/actions-gh-pages@v3 | |
| if: ${{ github.ref == 'refs/heads/main' && matrix.os == 'ubuntu-latest'}} | |
| with: | |
| github_token: ${{ secrets.GITHUB_TOKEN }} | |
| publish_dir: ./site | |
| # tox: | |
| # runs-on: ${{ matrix.os }} | |
| # defaults: | |
| # run: | |
| # shell: bash -l {0} | |
| # strategy: | |
| # matrix: | |
| # os: ["ubuntu-latest", "windows-latest"] | |
| # max-parallel: 5 | |
| # env: | |
| # FAKE_HISEQ: 1 | |
| # steps: | |
| # - uses: actions/checkout@v2 | |
| # - name: Cache conda | |
| # uses: actions/cache@v2 | |
| # env: | |
| # # Increase this value to reset cache if etc/example-environment.yml has not changed | |
| # CACHE_NUMBER: 0 | |
| # with: | |
| # path: ~/conda_pkgs_dir | |
| # key: ${{ runner.os }}-conda-${{ env.CACHE_NUMBER }}-${{ | |
| # hashFiles('.github/ci_env.yml') }} | |
| # - uses: conda-incubator/setup-miniconda@v2 | |
| # with: | |
| # miniforge-version: latest | |
| # environment-file: .github/ci_env.yml | |
| # activate-environment: pyseq | |
| # use-only-tar-bz2: true # IMPORTANT: This needs to be set for caching to work properly! | |
| # - name: Test with Tox | |
| # run: | | |
| # tox -vv |