coverage

.github/workflows/run-pytest.yml

@@ -34,10 +34,23 @@ jobs:
           username: ${{ secrets.HARBOR_USERNAME }}
           password: ${{ secrets.HARBOR_PASSWORD }}
 
-      - name: Run tests with pytest
+      - name: Run tests with pytest and generate report
         run: >
           docker run
-          --name cern-sis/biproject
+          --name biproject
           --network=host
-          -v "$(pwd)"/cern-sis/biproject:/opt/airflow/tests
-          --entrypoint pytest cern-sis/biproject /opt/airflow/tests
+          -v "$(pwd)"/tests:/opt/airflow/tests
+          -v "$(pwd)"/data:/opt/airflow/data
+          --entrypoint pytest
+          $REGISTRY/$IMAGE@${{ steps.build.outputs.image-digest }}
+          tests
+          --cov=./
+          --cov-report=xml
+
+      - name: Copy test coverage file to host machine
+        run: docker cp biproject:/opt/airflow/coverage.xml .
+
+      - name: Upload Coverage to Codecov
+        uses: codecov/codecov-action@v3
+        with:
+          verbose: true