Improve ruff config

[nquetschlich]

I added more ruff checks using https://github.com/cda-tum/mqt-qcec/blob/main/pyproject.toml as a template.

[codecov]

Codecov Report

Attention: Patch coverage is 98.76543% with 1 lines in your changes are missing coverage. Please review.

Project coverage is 91.8%. Comparing base (b430673) to head (e78fbac).

Files	Patch %	Lines
src/mqt/bench/benchmarks/ae.py	50.0%	1 Missing ⚠️

Additional details and impacted files

@@           Coverage Diff           @@
##            main    #315     +/-   ##
=======================================
- Coverage   91.9%   91.8%   -0.1%     
=======================================
  Files         46      46             
  Lines       2416    2419      +3     
=======================================
+ Hits        2221    2223      +2     
- Misses       195     196      +1     

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[burgholzer]

I took the liberty of updating a little more of the overall ruff/pre-commit configuration.
MQT Bench now also complies with all the guidelines of the Scientific Python Guide from https://learn.scientific-python.org/development/guides/repo-review/.
I will take care of getting the CI green.

[burgholzer]

LGTM

Would be nice if these changes would also make it to the other repositories!