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# Sphinx build info version 1 | ||
# This file hashes the configuration used when building these files. When it is not found, a full rebuild will be done. | ||
config: a44a3b5e49715f78f8dd1c4affa19a43 | ||
tags: 645f666f9bcd5a90fca523b33c5a78b7 |
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_sources/ColabFold/old/ColabFold_AF2_mmseqs2.ipynb
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# Tutorials | ||
|
||
## Table of Contents | ||
|
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```{tableofcontents} | ||
``` |
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_sphinx_design_static/design-style.4045f2051d55cab465a707391d5b2007.min.css
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var sd_labels_by_text = {}; | ||
|
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function ready() { | ||
const li = document.getElementsByClassName("sd-tab-label"); | ||
for (const label of li) { | ||
syncId = label.getAttribute("data-sync-id"); | ||
if (syncId) { | ||
label.onclick = onLabelClick; | ||
if (!sd_labels_by_text[syncId]) { | ||
sd_labels_by_text[syncId] = []; | ||
} | ||
sd_labels_by_text[syncId].push(label); | ||
} | ||
} | ||
} | ||
|
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function onLabelClick() { | ||
// Activate other inputs with the same sync id. | ||
syncId = this.getAttribute("data-sync-id"); | ||
for (label of sd_labels_by_text[syncId]) { | ||
if (label === this) continue; | ||
label.previousElementSibling.checked = true; | ||
} | ||
window.localStorage.setItem("sphinx-design-last-tab", syncId); | ||
} | ||
|
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document.addEventListener("DOMContentLoaded", ready, false); |
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/* | ||
* _sphinx_javascript_frameworks_compat.js | ||
* ~~~~~~~~~~ | ||
* | ||
* Compatability shim for jQuery and underscores.js. | ||
* | ||
* WILL BE REMOVED IN Sphinx 6.0 | ||
* xref RemovedInSphinx60Warning | ||
* | ||
*/ | ||
|
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/** | ||
* select a different prefix for underscore | ||
*/ | ||
$u = _.noConflict(); | ||
|
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|
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/** | ||
* small helper function to urldecode strings | ||
* | ||
* See https://developer.mozilla.org/en-US/docs/Web/JavaScript/Reference/Global_Objects/decodeURIComponent#Decoding_query_parameters_from_a_URL | ||
*/ | ||
jQuery.urldecode = function(x) { | ||
if (!x) { | ||
return x | ||
} | ||
return decodeURIComponent(x.replace(/\+/g, ' ')); | ||
}; | ||
|
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/** | ||
* small helper function to urlencode strings | ||
*/ | ||
jQuery.urlencode = encodeURIComponent; | ||
|
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/** | ||
* This function returns the parsed url parameters of the | ||
* current request. Multiple values per key are supported, | ||
* it will always return arrays of strings for the value parts. | ||
*/ | ||
jQuery.getQueryParameters = function(s) { | ||
if (typeof s === 'undefined') | ||
s = document.location.search; | ||
var parts = s.substr(s.indexOf('?') + 1).split('&'); | ||
var result = {}; | ||
for (var i = 0; i < parts.length; i++) { | ||
var tmp = parts[i].split('=', 2); | ||
var key = jQuery.urldecode(tmp[0]); | ||
var value = jQuery.urldecode(tmp[1]); | ||
if (key in result) | ||
result[key].push(value); | ||
else | ||
result[key] = [value]; | ||
} | ||
return result; | ||
}; | ||
|
||
/** | ||
* highlight a given string on a jquery object by wrapping it in | ||
* span elements with the given class name. | ||
*/ | ||
jQuery.fn.highlightText = function(text, className) { | ||
function highlight(node, addItems) { | ||
if (node.nodeType === 3) { | ||
var val = node.nodeValue; | ||
var pos = val.toLowerCase().indexOf(text); | ||
if (pos >= 0 && | ||
!jQuery(node.parentNode).hasClass(className) && | ||
!jQuery(node.parentNode).hasClass("nohighlight")) { | ||
var span; | ||
var isInSVG = jQuery(node).closest("body, svg, foreignObject").is("svg"); | ||
if (isInSVG) { | ||
span = document.createElementNS("http://www.w3.org/2000/svg", "tspan"); | ||
} else { | ||
span = document.createElement("span"); | ||
span.className = className; | ||
} | ||
span.appendChild(document.createTextNode(val.substr(pos, text.length))); | ||
node.parentNode.insertBefore(span, node.parentNode.insertBefore( | ||
document.createTextNode(val.substr(pos + text.length)), | ||
node.nextSibling)); | ||
node.nodeValue = val.substr(0, pos); | ||
if (isInSVG) { | ||
var rect = document.createElementNS("http://www.w3.org/2000/svg", "rect"); | ||
var bbox = node.parentElement.getBBox(); | ||
rect.x.baseVal.value = bbox.x; | ||
rect.y.baseVal.value = bbox.y; | ||
rect.width.baseVal.value = bbox.width; | ||
rect.height.baseVal.value = bbox.height; | ||
rect.setAttribute('class', className); | ||
addItems.push({ | ||
"parent": node.parentNode, | ||
"target": rect}); | ||
} | ||
} | ||
} | ||
else if (!jQuery(node).is("button, select, textarea")) { | ||
jQuery.each(node.childNodes, function() { | ||
highlight(this, addItems); | ||
}); | ||
} | ||
} | ||
var addItems = []; | ||
var result = this.each(function() { | ||
highlight(this, addItems); | ||
}); | ||
for (var i = 0; i < addItems.length; ++i) { | ||
jQuery(addItems[i].parent).before(addItems[i].target); | ||
} | ||
return result; | ||
}; | ||
|
||
/* | ||
* backward compatibility for jQuery.browser | ||
* This will be supported until firefox bug is fixed. | ||
*/ | ||
if (!jQuery.browser) { | ||
jQuery.uaMatch = function(ua) { | ||
ua = ua.toLowerCase(); | ||
|
||
var match = /(chrome)[ \/]([\w.]+)/.exec(ua) || | ||
/(webkit)[ \/]([\w.]+)/.exec(ua) || | ||
/(opera)(?:.*version|)[ \/]([\w.]+)/.exec(ua) || | ||
/(msie) ([\w.]+)/.exec(ua) || | ||
ua.indexOf("compatible") < 0 && /(mozilla)(?:.*? rv:([\w.]+)|)/.exec(ua) || | ||
[]; | ||
|
||
return { | ||
browser: match[ 1 ] || "", | ||
version: match[ 2 ] || "0" | ||
}; | ||
}; | ||
jQuery.browser = {}; | ||
jQuery.browser[jQuery.uaMatch(navigator.userAgent).browser] = true; | ||
} |
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