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V-pipe 1.0 release candidate
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@sposadac sposadac released this 13 Apr 14:28
· 1112 commits to master since this release
v1.0.0-rc1
9a1c6fc

This is a release candidate of Vpipe 1.0.

  • It has been tested on linux and macOS, using python 3.8 and snakemake 5.14.0. There are known limitations with executing SAVAGE for haplotype reconstruction on macOS.

  • Apart from VICUNA, all dependencies are managed by conda, and we strongly recommend to use --use-conda. VICUNA is only needed when reads are aligned with ngshmmalign and a references/initial_consensus.fasta file is not provided.

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