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[fix] keeping the linter happy
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DrYak committed Nov 21, 2024
1 parent cd56de9 commit c35a480
Showing 1 changed file with 10 additions and 6 deletions.
Original file line number Diff line number Diff line change
Expand Up @@ -210,6 +210,7 @@ use rule performance_measures_local from varyvilocaparams as varyvilocaparams_pe
# distance rules
##############


### To run haplodmf uncomment this rule and comment-out rule distance_run_method_local_global
rule distance_run_haplodmf:
input:
Expand Down Expand Up @@ -239,9 +240,10 @@ rule distance_run_haplodmf:
f"results/distance/method_runs/{distance.paramspace.wildcard_pattern}/haplodmf/replicates/{{replicate}}/benchmark_.tsv"
threads: 30
resources:
mem_mb=60024, # 10000, #60024,
runtime=5*24*60, #15*24*60,
conda: "/cluster/home/lfuhrmann/micromamba/envs/haplodmf"
mem_mb=60024, # 10000, #60024,
runtime=5 * 24 * 60, #15*24*60,
conda:
"/cluster/home/lfuhrmann/micromamba/envs/haplodmf"
shell:
"""
mkdir -p "{output.dname_work}"
Expand Down Expand Up @@ -461,6 +463,7 @@ use rule performance_measures_global from distance as distance_performance_measu

### To run haplodmf uncomment this rule and comment-out rule realdata_run_method_local_global


rule realdata_run_haplodmf:
input:
fname_bam=lambda wildcards: (
Expand Down Expand Up @@ -489,9 +492,10 @@ rule realdata_run_haplodmf:
f"results/realdata/method_runs/{realdata.paramspace.wildcard_pattern}/haplodmf/replicates/{{replicate}}/benchmark_.tsv"
threads: 30
resources:
mem_mb=60024, # 10000, #60024,
runtime=5*24*60, #15*24*60,
conda: "/cluster/home/lfuhrmann/micromamba/envs/haplodmf"
mem_mb=60024, # 10000, #60024,
runtime=5 * 24 * 60, #15*24*60,
conda:
"/cluster/home/lfuhrmann/micromamba/envs/haplodmf"
shell:
"""
mkdir -p "{output.dname_work}"
Expand Down

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