update enviroment

cbg-ethz · Jun 5, 2024 · a205de3 · a205de3
1 parent 51b874e
commit a205de3
Showing 1 changed file with 14 additions and 1 deletion.
diff --git a/workflow/envs/paired_end_read_merger.yaml b/workflow/envs/paired_end_read_merger.yaml
@@ -3,6 +3,19 @@ channels:
   - bioconda
 dependencies:
   - samtools=1.10
+  - python >=3
+  - progress
+  - numpy
+  - pandas
+  - pyyaml
+  - biopython
+  - bcbio-gff
+  - pysam
+  - pysamstats
+  - scikit-learn
+  - scipy
+  - matplotlib-base
+  - mafft
   - pip
   - pip:
-    - git+https://github.com/cbg-ethz/smallgenomeutilities@master
+    - git+https://github.com/cbg-ethz/smallgenomeutilities@dev