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Fix typos in README.md
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kpj authored Oct 13, 2021
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Expand Up @@ -12,7 +12,7 @@ V-pipe is written using the Snakemake workflow management system.

## Usage

Different ways of initializing V-pipe are presented below. We strongly encourage you to deploy it [using the quick install script](#using-quick-install-script), as this our prefered method.
Different ways of initializing V-pipe are presented below. We strongly encourage you to deploy it [using the quick install script](#using-quick-install-script), as this is our preferred method.

V-pipe expects the input samples to be organized in a [two-level](config/#samples) directory hierarchy,
and the sequencing reads must be provided in a sub-folder named `raw_data`. Further details can be found on the [website](https://cbg-ethz.github.io/V-pipe/usage/).
Expand Down Expand Up @@ -40,7 +40,7 @@ This script will download and install miniconda, checkout the V-pipe git reposit
```bash
cd work
# edit config.yaml and provide samples/ directory
./vpipe --jobs 4 --printshellcmds --dry-run
./vpipe --jobs 4 --printshellcmds --dry-run
```

### Using Docker
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