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DrYak committed Jun 7, 2024
1 parent 2af73f9 commit 59386c7
Showing 1 changed file with 2 additions and 1 deletion.
3 changes: 2 additions & 1 deletion workflow/rules/snv.smk
Original file line number Diff line number Diff line change
Expand Up @@ -299,7 +299,8 @@ rule paired_end_read_merger:
cohortdir("cohort_consensus.fasta")
if config.viloca["consensus"]
else reference_file
)+".fai",
)
+ ".fai",
output:
fname_bam_merged="{dataset}/alignment/REF_aln.merged.bam",
fname_sam_merged=temp_with_prefix("{dataset}/alignment/REF_aln.merged.sam"),
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