add indel settings and performance eval

cbg-ethz · Jun 7, 2024 · 1b257c0 · 1b257c0
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diff --git a/...experimental_data/Two-strain-SARS-CoV-2/A3_Wild_10_04/A3_Wild_10_04_expected_variants.csv b/...experimental_data/Two-strain-SARS-CoV-2/A3_Wild_10_04/A3_Wild_10_04_expected_variants.csv
diff --git a/...experimental_data/Two-strain-SARS-CoV-2/B1_Wild_10_02/B1_Wild_10_02_expected_variants.csv b/...experimental_data/Two-strain-SARS-CoV-2/B1_Wild_10_02/B1_Wild_10_02_expected_variants.csv
diff --git a/...experimental_data/Two-strain-SARS-CoV-2/C2_Wild_10_03/C2_Wild_10_03_expected_variants.csv b/...experimental_data/Two-strain-SARS-CoV-2/C2_Wild_10_03/C2_Wild_10_03_expected_variants.csv
diff --git a/...experimental_data/Two-strain-SARS-CoV-2/D1_Wild_50_01/D1_Wild_50_01_expected_variants.csv b/...experimental_data/Two-strain-SARS-CoV-2/D1_Wild_50_01/D1_Wild_50_01_expected_variants.csv
diff --git a/...experimental_data/Two-strain-SARS-CoV-2/D3_Wild_50_04/D3_Wild_50_04_expected_variants.csv b/...experimental_data/Two-strain-SARS-CoV-2/D3_Wild_50_04/D3_Wild_50_04_expected_variants.csv
diff --git a/...experimental_data/Two-strain-SARS-CoV-2/E1_Wild_50_02/E1_Wild_50_02_expected_variants.csv b/...experimental_data/Two-strain-SARS-CoV-2/E1_Wild_50_02/E1_Wild_50_02_expected_variants.csv
diff --git a/...perimental_data/Two-strain-SARS-CoV-2/G1_Wild_100_01/G1_Wild_100_01_expected_variants.csv b/...perimental_data/Two-strain-SARS-CoV-2/G1_Wild_100_01/G1_Wild_100_01_expected_variants.csv
diff --git a/...perimental_data/Two-strain-SARS-CoV-2/G2_Wild_100_03/G2_Wild_100_03_expected_variants.csv b/...perimental_data/Two-strain-SARS-CoV-2/G2_Wild_100_03/G2_Wild_100_03_expected_variants.csv
diff --git a/...perimental_data/Two-strain-SARS-CoV-2/H1_Wild_100_02/H1_Wild_100_02_expected_variants.csv b/...perimental_data/Two-strain-SARS-CoV-2/H1_Wild_100_02/H1_Wild_100_02_expected_variants.csv
diff --git a/...orkflows/benchmark/resources/experimental_data/Two-strain-SARS-CoV-2/nCoV-2019.insert.bed b/...orkflows/benchmark/resources/experimental_data/Two-strain-SARS-CoV-2/nCoV-2019.insert.bed