[add] notebooks for figures in manuscript

cbg-ethz · Jun 7, 2024 · 04ca094 · 04ca094
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diff --git a/.../resources/local_haplotype_setup/workflow/notebooks/Figure_2__varyvilocaparams_snvs.ipynb b/.../resources/local_haplotype_setup/workflow/notebooks/Figure_2__varyvilocaparams_snvs.ipynb
diff --git a/...tup/workflow/notebooks/Figure_3A+B__SupFig_X__distance__snvs_precision_recall_plots.ipynb b/...tup/workflow/notebooks/Figure_3A+B__SupFig_X__distance__snvs_precision_recall_plots.ipynb
diff --git a/...ces/local_haplotype_setup/workflow/notebooks/Figure_3A__distance__snvs_freq_scatter.ipynb b/...ces/local_haplotype_setup/workflow/notebooks/Figure_3A__distance__snvs_freq_scatter.ipynb
diff --git a/...cal_haplotype_setup/workflow/notebooks/Figure_4A+B__distance__haplos_populations_pr.ipynb b/...cal_haplotype_setup/workflow/notebooks/Figure_4A+B__distance__haplos_populations_pr.ipynb
diff --git a/...ark/resources/local_haplotype_setup/workflow/notebooks/Figure_4C__distance__runtime.ipynb b/...ark/resources/local_haplotype_setup/workflow/notebooks/Figure_4C__distance__runtime.ipynb
diff --git a/...type_setup/workflow/notebooks/Figure_5A__realdata__analyse_real_data_mutation_calls.ipynb b/...type_setup/workflow/notebooks/Figure_5A__realdata__analyse_real_data_mutation_calls.ipynb
diff --git a/...ark/resources/local_haplotype_setup/workflow/notebooks/Figure_5B__realdata__iav_mix.ipynb b/...ark/resources/local_haplotype_setup/workflow/notebooks/Figure_5B__realdata__iav_mix.ipynb
diff --git a/...ow/notebooks/SuppFigure_S3__distance__snvs_precision_recall_curve_viloca_supplement.ipynb b/...ow/notebooks/SuppFigure_S3__distance__snvs_precision_recall_curve_viloca_supplement.ipynb