merge #71
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1 error
docker
buildx failed with: ERROR: failed to solve: process "/bin/sh -c for virus in ${virus_download_list:-$(ls ${test_data}/)}; do printf '\\n\\n\\e[36;1mvirus: %s\\e[0m\\n' \"${virus}\" && ln -sf \"${test_data}/${virus}/\" ./samples && extra=config/config-extra.yaml && if test -e samples/samples.tsv; then cp -f samples/samples.tsv config/samples.tsv && while read s b l p o; do test -z \"${p}\" && continue; extra=\"config/config-trim.yaml ${extra}\"; printf '\\e[36m(with primers trimming)\\e[0m\\n'; break; done < config/samples.tsv; fi && if test -e samples/config-extra.yaml; then cp -f samples/config-extra.yaml config/config-extra.yaml; printf '\\e[36m(with extra config)\\e[0m\\n'; cat config/config-extra.yaml; else cp -f config/config-empty.yaml config/config-extra.yaml; fi && printf 'config files: %s\\n' \"${extra}\" && PYTHONUNBUFFERED=1 snakemake -s ${vpipe_path}/workflow/Snakefile -j 1 --conda-create-envs-only --use-conda --conda-prefix ${envs_path} --configfile ${extra} --config \"general={virus_base_config: ${virus}}\" && rm -f samples config/samples.tsv config/config-extra.yaml ; done && jdupes -Lr ${envs_path}/" did not complete successfully: exit code: 1
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