Skip to content

0.3.0 - V-pipe integration

Compare
Choose a tag to compare
@DrYak DrYak released this 04 May 23:32
· 48 commits to main since this release
  • Converted to a proper python package with poetry and click
    • Command format has changed and uses subcommands
  • Integrated into V-pipe
  • Outputs JSON for dashboard uploads
  • Tools for generating input to deconvolution (tallymut)
  • nodate mode (for benchmarks w/o timeline)
  • Presets and examples
  • Automatic test (does first/fastest curve from preprint)
  • Partial support for aarch64
    • Optionnal BCBio still missing on bioconda

Bugfixes:

  • half-height curves

    if a variant in the var_date interval and one not being considered
    are very close to each other, there is a risk that bootstraping
    will attribute only half to the variant and half to "undetermined"

Publication:

  • Notebook graphs can now be replicated from command line