0.3.0 - V-pipe integration
- Converted to a proper python package with poetry and click
- Command format has changed and uses subcommands
- Integrated into V-pipe
- Outputs JSON for dashboard uploads
- Tools for generating input to deconvolution (tallymut)
- nodate mode (for benchmarks w/o timeline)
- Presets and examples
- Automatic test (does first/fastest curve from preprint)
- Partial support for aarch64
- Optionnal BCBio still missing on bioconda
Bugfixes:
-
half-height curves
if a variant in the var_date interval and one not being considered
are very close to each other, there is a risk that bootstraping
will attribute only half to the variant and half to "undetermined"
Publication:
- Notebook graphs can now be replicated from command line