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Update gDNA_sample_annotation_final.tsv
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Remove samples not used in the analysis (compare supplementary table 1)
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@JohannesGawron
JohannesGawron authored Jul 19, 2024
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Showing 1 changed file with 0 additions and 64 deletions.
64 changes: 0 additions & 64 deletions experiments/preprocessing/gDNA_sample_annotation_final.tsv
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Expand Up @@ -151,25 +151,6 @@ Br23_26 Br23 hsapiens patient NA NA breast CTC-cluster CTC 1 1 0 4 cBr23-10 NA 4
Br23_27 Br23 hsapiens patient NA NA breast CTC-cluster CTC 3 3 0 4 cBr23-10 NA 4-cell cluster Barbara_Szczerba 160422 20170308;20170322 NA CTC
Br23_28 Br23 hsapiens patient NA NA breast CTC-single CTC 1 1 0 NA NA NA NA Barbara_Szczerba 160422 20170308;20170322 NA CTC
Br23_29 Br23 hsapiens patient NA NA breast CTC-cluster-WBC CTC-WBC 3 2 1 2 cBr23-11 NA NA Barbara_Szczerba 160422 20170308;20170322 NA CTC-WBC
Br25_1 Br25 hsapiens patient NA NA breast CTC-single CTC 1 1 0 NA NA NA NA Barbara_Szczerba 160527 20170308;20170322 NA CTC
Br26_1 Br26 hsapiens patient NA NA breast CTC-single CTC 1 1 0 NA NA NA RBC Barbara_Szczerba 160530 20170308;20170322 NA CTC
Br26_2 Br26 hsapiens patient NA NA breast CTC-single CTC 1 1 0 NA NA NA NA Barbara_Szczerba 160530 20170308;20170322 NA CTC
Br26_3 Br26 hsapiens patient NA NA breast CTC-cluster CTC 2 2 0 2 cBr38-2 NA NA Barbara_Szczerba 160530 20170308;20170322 NA CTC
Br26_4 Br26 hsapiens patient NA NA breast CTC-single CTC 1 1 0 NA NA NA NA Barbara_Szczerba 160530 20170308;20170322 NA CTC
Br26_5 Br26 hsapiens patient NA NA breast CTC-single CTC 1 1 0 NA NA NA NA Barbara_Szczerba 160530 20170308;20170322 NA CTC
Br26_6 Br26 hsapiens patient NA NA normal WBC WBC 1 0 0 NA NA NA reference Barbara_Szczerba 160530 20170308;20170322 NA WBC
Br30_1 Br30 hsapiens patient NA NA breast CTC-single CTC 1 1 0 NA NA NA RBC Barbara_Szczerba 160722 20170308;20170322 NA CTC
Br30_11 Br30 hsapiens patient NA NA normal WBC WBC 1 0 0 NA NA NA reference Barbara_Szczerba 161020 20170308;20170322 NA WBC
Br30_12 Br30 hsapiens patient NA NA normal WBC WBC 3 0 0 NA NA NA reference Barbara_Szczerba 161020 20170308;20170322 NA WBC
Br30_13 Br30 hsapiens patient NA NA breast CTC-single CTC 1 1 0 NA NA NA NA Barbara_Szczerba 161201 20170509;20170517 NA CTC
Br30_2 Br30 hsapiens patient NA NA breast CTC-single CTC 1 1 0 NA NA NA RBC? Barbara_Szczerba 160722 20170308;20170322 NA CTC
Br30_3 Br30 hsapiens patient NA NA breast CTC-single CTC 1 1 0 NA NA NA RBC Barbara_Szczerba 160722 20170308;20170322 NA CTC
Br30_6 Br30 hsapiens patient NA NA breast CTC-single CTC 1 1 0 NA NA NA NA Barbara_Szczerba 160722 20170308;20170322 NA CTC
Br30_7 Br30 hsapiens patient NA NA breast CTC-single-WBC CTC-WBC 2 1 1 NA NA NA NA Barbara_Szczerba 160722 20170308;20170322 NA CTC-WBC
Br30_8 Br30 hsapiens patient NA NA breast CTC-single-WBC CTC-WBC 2 1 1 NA NA NA NA Barbara_Szczerba 160722 20170308;20170322 NA CTC-WBC
Br37_1 Br37 hsapiens patient NA NA breast CTC-single CTC 1 1 0 NA NA NA NA Barbara_Szczerba 160822 20170308;20170322 NA CTC
Br37_2 Br37 hsapiens patient NA NA breast CTC-single CTC 1 1 0 NA NA NA NA Barbara_Szczerba 160822 20170308;20170322 NA CTC
Br37_4 Br37 hsapiens patient NA NA breast CTC-single-WBC CTC-WBC 2 1 1 NA NA NA NA Barbara_Szczerba 160831 20170308;20170322 NA CTC-WBC
Br38_1 Br38 hsapiens patient NA NA breast CTC-single CTC 1 1 0 NA NA NA NA Barbara_Szczerba 160823 20170308;20170322 NA CTC
Br38_10 Br38 hsapiens patient NA NA breast CTC-single CTC 1 1 0 NA NA NA NA Barbara_Szczerba 160823 20170308;20170322 NA CTC
Br38_11 Br38 hsapiens patient NA NA breast CTC-single CTC 1 1 0 NA NA NA NA Barbara_Szczerba 160825 20170308;20170322 NA CTC
Expand Down Expand Up @@ -202,28 +183,6 @@ Br39_31 Br39 hsapiens patient NA NA breast CTC-cluster CTC 1 1 0 3 cBr39-5 NA 3-
Br39_32 Br39 hsapiens patient NA NA breast CTC-cluster CTC 2 2 0 3 cBr39-5 NA 3-cell cluster Barbara_Szczerba 160826 20170509;20170517 NA WBC
Br39_5 Br39 hsapiens patient NA NA breast CTC-single CTC 1 1 0 NA NA NA NA Barbara_Szczerba 160826 20170628 NA CTC
Br39_6 Br39 hsapiens patient NA NA breast CTC-single CTC 1 1 0 NA NA NA NA Barbara_Szczerba 160826 20170628 NA CTC
Br44_1 Br44 hsapiens patient NA NA normal CTC-single-WBC WBC 1 0 1 NA sBr44-1 NA CTC+WBC Barbara_Szczerba 161115 20170308;20170322 NA WBC
Br44_3 Br44 hsapiens patient NA NA breast CTC-single CTC 1 1 0 NA NA NA NA Barbara_Szczerba 161115 20170308;20170322 NA CTC
Br44_5 Br44 hsapiens patient NA NA breast CTC-single CTC 1 1 0 NA NA NA NA Barbara_Szczerba 161115 20170308;20170322 NA CTC
Br44_6 Br44 hsapiens patient NA NA normal WBC WBC 1 0 0 NA NA NA reference Barbara_Szczerba 161115 20170308;20170322 NA WBC
Br44_7 Br44 hsapiens patient NA NA normal WBC WBC 1 0 0 NA NA NA reference Barbara_Szczerba 161115 20170308;20170322 NA WBC
Br44_8 Br44 hsapiens patient NA NA normal WBC WBC 1 0 0 NA NA NA reference Barbara_Szczerba 161115 20170308;20170322 NA WBC
Br45_CTC_1 Br45 hsapiens patient NA NA breast CTC-single CTC 1 1 0 NA NA 0 NA Barbara_Szczerba 170113 20170517;20170524;20170602 NA CTC
Br45_CTC_2 Br45 hsapiens patient NA NA breast CTC-single CTC 1 1 0 NA NA 0 NA Barbara_Szczerba 170113 20170628 NA CTC
Br45_CTC_3 Br45 hsapiens patient NA NA breast CTC-single CTC 1 1 0 NA NA 0 NA Barbara_Szczerba 170113 20170509;20170517 NA CTC
Br45_CTC_4 Br45 hsapiens patient NA NA breast CTC-single CTC 1 1 0 NA NA NA NA Barbara_Szczerba 170113 20170628 NA CTC
Br45_CTC_5 Br45 hsapiens patient NA NA normal WBC WBC 1 0 1 NA NA 0 reference Barbara_Szczerba 170113 20170517;20170524;20170602 NA WBC
Br45_CTC_6 Br45 hsapiens patient NA NA normal WBC WBC 1 0 1 NA NA 0 reference Barbara_Szczerba 170113 20170517;20170524;20170602 NA WBC
Br46_1_45 Br46 hsapiens patient NA NA breast CTC-single CTC 1 1 0 NA NA NA NA Barbara_Szczerba 161208 20170628 NA CTC
Br46_2_46 Br46 hsapiens patient NA NA breast CTC-single CTC 1 1 0 NA NA NA NA Barbara_Szczerba 161208 20170509;20170517 NA CTC
Br46_3_47 Br46 hsapiens patient NA NA breast CTC-single CTC 1 1 0 NA NA NA NA Barbara_Szczerba 161208 20170509;20170517 NA CTC
Br46_4_48 Br46 hsapiens patient NA NA normal WBC WBC 1 0 0 NA NA NA reference Barbara_Szczerba 161208 20170509;20170517 NA WBC
Br46_5_49 Br46 hsapiens patient NA NA normal WBC WBC 1 0 0 NA NA NA reference Barbara_Szczerba 161208 20170509;20170517 NA WBC
Br46_6 Br46 hsapiens patient NA NA normal WBC WBC 1 0 0 NA NA NA NA Barbara_Szczerba 161208 20170509;20170517 NA WBC
Br53_CTC_1 Br53 hsapiens patient NA NA breast CTC-cluster CTC 2 2 0 2 cBr53-1 0 NA Barbara_Szczerba 170113 20170517;20170524;20170602 NA CTC
Br53_CTC_2 Br53 hsapiens patient NA NA normal WBC WBC 3 0 3 NA NA 0 reference Barbara_Szczerba 170113 20170517;20170524;20170602 NA WBC
Br53_CTC_3 Br53 hsapiens patient NA NA normal WBC WBC 1 0 1 NA NA 0 reference Barbara_Szczerba 170113 20170517;20170524;20170602 NA WBC
Br53_CTC_4 Br53 hsapiens patient NA NA normal WBC WBC 1 0 1 NA NA 0 reference Barbara_Szczerba 170113 20170517;20170524;20170602 NA WBC
Br57_CTC_1 Br57 hsapiens patient NA NA breast CTC-single-WBC CTC-WBC 2 1 1 NA NA 0 1CTC+WBC Barbara_Szczerba 170301 20170628 NA CTC-WBC
Br57_CTC_10 Br57 hsapiens patient NA NA breast CTC-single CTC 1 1 0 NA NA 0 NA Barbara_Szczerba 170301 20170517;20170524;20170602 NA CTC
Br57_CTC_11 Br57 hsapiens patient NA NA breast CTC-single CTC 1 1 0 NA NA 0 NA Barbara_Szczerba 170301 20170517;20170524;20170602 NA CTC
Expand Down Expand Up @@ -349,35 +308,12 @@ Lu2_6 Lu2 hsapiens patient NA NA lung CTC-single CTC 1 1 0 NA NA NA NA Barbara_S
Lu2_7 Lu2 hsapiens patient NA NA lung CTC-single CTC 1 1 0 NA NA NA NA Barbara_Szczerba 160425 20170509;20170517 NA CTC
Lu2_8 Lu2 hsapiens patient NA NA lung CTC-single CTC 1 1 0 NA NA NA NA Barbara_Szczerba 160425 20170628 NA CTC
Lu2_9 Lu2 hsapiens patient NA NA lung CTC-single CTC 1 1 0 NA NA NA NA Barbara_Szczerba 160425 20170509;20170517 NA CTC
Lu7_1 Lu7 hsapiens patient NA NA lung CTC-single CTC 1 1 0 NA NA NA NA Barbara_Szczerba 160623 20170509;20170517 NA CTC
Lu7_10 Lu7 hsapiens patient NA NA lung CTC-single CTC 1 1 0 NA NA NA NA Barbara_Szczerba 160623 20170509;20170517 NA CTC
Lu7_11 Lu7 hsapiens patient NA NA lung CTC-single CTC 1 1 0 NA NA NA NA Barbara_Szczerba 160623 20170509;20170517 NA CTC
Lu7_12 Lu7 hsapiens patient NA NA lung CTC-single CTC 1 1 0 NA NA NA NA Barbara_Szczerba 160623 20170509;20170517 NA CTC
Lu7_13 Lu7 hsapiens patient NA NA lung CTC-single CTC 1 1 0 NA NA NA NA Barbara_Szczerba 160623 20170509;20170517 NA CTC
Lu7_14 Lu7 hsapiens patient NA NA lung CTC-single CTC 1 1 0 NA NA NA NA Barbara_Szczerba 160623 20170509;20170517 NA CTC
Lu7_15 Lu7 hsapiens patient NA NA lung CTC-single CTC 1 1 0 NA NA NA NA Barbara_Szczerba 160623 20170509;20170517 NA CTC
Lu7_16 Lu7 hsapiens patient NA NA lung CTC-single CTC 1 1 0 NA NA NA NA Barbara_Szczerba 160623 20170509;20170517 NA CTC
Lu7_17 Lu7 hsapiens patient NA NA lung CTC-single CTC 1 1 0 NA NA NA NA Barbara_Szczerba 160623 20170628 NA CTC
Lu7_18 Lu7 hsapiens patient NA NA normal WBC WBC 1 0 0 NA NA NA reference Barbara_Szczerba 160623 20170509;20170517 NA WBC
Lu7_19 Lu7 hsapiens patient NA NA normal WBC WBC 1 0 0 NA NA NA reference Barbara_Szczerba 160623 20170509;20170517 NA WBC
Lu7_2 Lu7 hsapiens patient NA NA lung CTC-single CTC 1 1 0 NA NA NA NA Barbara_Szczerba 160623 20170509;20170517 NA CTC
Lu7_3 Lu7 hsapiens patient NA NA lung CTC-single CTC 1 1 0 NA NA NA NA Barbara_Szczerba 160623 20170509;20170517 NA CTC
Lu7_4 Lu7 hsapiens patient NA NA lung CTC-single CTC 1 1 0 NA NA NA NA Barbara_Szczerba 160623 20170628 NA CTC
Lu7_5 Lu7 hsapiens patient NA NA lung CTC-single CTC 1 1 0 NA NA NA NA Barbara_Szczerba 160623 20170628 NA CTC
Lu7_6 Lu7 hsapiens patient NA NA lung CTC-single CTC 1 1 0 NA NA NA NA Barbara_Szczerba 160623 20170509;20170517 NA CTC
Lu7_7 Lu7 hsapiens patient NA NA lung CTC-single CTC 1 1 0 NA NA NA NA Barbara_Szczerba 160623 20170628 NA CTC
Lu7_8 Lu7 hsapiens patient NA NA lung CTC-single CTC 1 1 0 NA NA NA NA Barbara_Szczerba 160623 20170509;20170517 NA CTC
Lu7_9 Lu7 hsapiens patient NA NA lung CTC-single CTC 1 1 0 NA NA NA NA Barbara_Szczerba 160623 20170509;20170517 NA CTC
Ov8_1 Ov8 hsapiens patient NA NA ovarian CTC-cluster CTC 3 3 0 3 cOv8-1 NA NA Barbara_Szczerba 160805 20170509;20170517 NA CTC
Ov8_2 Ov8 hsapiens patient NA NA ovarian CTC-single CTC 1 1 0 NA NA NA NA Barbara_Szczerba 160805 20170308;20170322 NA CTC
Pr2_3 Pr2 hsapiens patient NA NA prostate CTC-single CTC 1 1 0 NA NA NA NA Barbara_Szczerba 160527 20170628 NA CTC
Pr6_1 Pr6 hsapiens patient NA NA prostate CTC-single CTC 1 1 0 NA NA NA NA Barbara_Szczerba 160905 20170509;20170517 NA CTC
Pr6_2 Pr6 hsapiens patient NA NA prostate CTC-single CTC 1 1 0 NA NA NA NA Barbara_Szczerba 160905 20170509;20170517 NA WBC
Pr6_3 Pr6 hsapiens patient NA NA prostate CTC-single CTC 1 1 0 NA NA NA NA Barbara_Szczerba 160905 20170509;20170517 NA CTC
Pr6_4 Pr6 hsapiens patient NA NA prostate CTC-cluster CTC 2 2 0 2 cPr6-1 NA NA Barbara_Szczerba 160905 20170509;20170517 NA CTC
Pr7_11 Pr7 hsapiens patient NA NA normal WBC WBC 1 0 0 NA NA NA reference Barbara_Szczerba 160905 20170509;20170517 NA WBC
Pr7_12 Pr7 hsapiens patient NA NA normal WBC WBC 2 0 0 NA NA NA reference Barbara_Szczerba 160905 20170509;20170517 NA WBC
Pr7_B Pr7 hsapiens patient NA NA prostate CTC-cluster CTC 1 1 0 2 cPr7-1 NA 2-cell cluster Barbara_Szczerba 160905 20170509;20170517 NA CTC
Pr9_CTC_1 Pr9 hsapiens patient NA NA prostate CTC-single CTC 1 1 0 NA NA 0 NA Barbara_Szczerba 170125 20170517;20170524;20170602 NA CTC
Pr9_CTC_10 Pr9 hsapiens patient NA NA prostate CTC-single CTC 1 1 0 NA NA 0 NA Barbara_Szczerba 170131 20170509;20170517 NA CTC
Pr9_CTC_11 Pr9 hsapiens patient NA NA prostate CTC-single CTC 1 1 0 NA NA 0 NA Barbara_Szczerba 170131 20170517;20170524;20170602 NA CTC
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