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Update gDNA_sample_annotation_final.tsv
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Remove unused samples from master table
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@JohannesGawron
JohannesGawron authored Jul 19, 2024
1 parent f452862 commit 27205a8
Showing 1 changed file with 1 addition and 16 deletions.
17 changes: 1 addition & 16 deletions experiments/preprocessing/gDNA_sample_annotation_final.tsv
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sample_id DONOR organism model tumor_model host cancer_type sample_type cell_type n_cells n_ctc n_wbc_attached ctc_cluster_size clusterID warning comments researcher ctc_collection_date sequencing_date mouse_id cell_type_corrected
1_Brx50_300K_sorted Brx50 hsapiens cell_line NA NA breast cell_culture ctc_derived_cell_line 300000 0 0 NA NA NA NA Barbara_Szczerba NA 20160720 NA ctc_derived_cell_line
2_Brx50_300K Brx50 hsapiens cell_line NA NA breast cell_culture ctc_derived_cell_line 300000 0 0 NA NA NA NA Barbara_Szczerba NA 20160720 NA ctc_derived_cell_line
300K_Brx50_CC2 Brx50 hsapiens cell_line NA NA breast cell_culture ctc_derived_cell_line 300000 0 0 NA NA NA NA Barbara_Szczerba NA 20170509;20170517 NA ctc_derived_cell_line
300K_Brx50_CC7 Brx50 hsapiens cell_line NA NA breast cell_culture ctc_derived_cell_line 300000 0 0 NA NA NA NA Barbara_Szczerba NA 20170509;20170517 NA ctc_derived_cell_line
300K_Brx50_CC9 Brx50 hsapiens cell_line NA NA breast cell_culture ctc_derived_cell_line 300000 0 0 NA NA NA NA Barbara_Szczerba NA 20170509;20170517 NA ctc_derived_cell_line
300K_Brx50_CD9 Brx50 hsapiens cell_line NA NA breast cell_culture ctc_derived_cell_line 300000 0 0 NA NA NA NA Barbara_Szczerba NA 20170509;20170517 NA ctc_derived_cell_line
300K_Brx50_SA6 Brx50 hsapiens cell_line NA NA breast cell_culture ctc_derived_cell_line 300000 0 0 NA NA NA NA Barbara_Szczerba NA 20170509;20170517 NA ctc_derived_cell_line
300K_Brx68_GFP Brx68 hsapiens cell_line NA NA breast cell_culture ctc_derived_cell_line 300000 0 0 NA NA NA NA Barbara_Szczerba NA 20170308;20170322 NA ctc_derived_cell_line
3_Br16_300K_sorted Br16 hsapiens cell_line NA NA breast cell_culture ctc_derived_cell_line 300000 0 0 NA NA NA NA Barbara_Szczerba NA 20160720 NA ctc_derived_cell_line
4_Br16_300K Br16 hsapiens cell_line NA NA breast cell_culture ctc_derived_cell_line 300000 0 0 NA NA NA NA Barbara_Szczerba NA 20160720 NA ctc_derived_cell_line
Br11_1 Br11 hsapiens patient NA NA breast CTC-single CTC 1 1 0 NA NA NA NA Barbara_Szczerba 170131 20170628 NA CTC
Br11_10 Br11 hsapiens patient NA NA breast CTC-cluster CTC 2 2 0 2 cBr11-2 0 NA Barbara_Szczerba 170131 20170517;20170524;20170602 NA CTC
Br11_11 Br11 hsapiens patient NA NA breast CTC-single CTC 1 1 0 NA NA 0 NA Barbara_Szczerba 170131 20170517;20170524;20170602 NA CTC
Expand Down Expand Up @@ -148,11 +138,6 @@ Br16_C8 Br16 hsapiens xenograft Br16 NSG breast CTC-cluster CTC 4 4 0 4 NSG-Br16
Br16_C9 Br16 hsapiens xenograft Br16 NSG breast CTC-single CTC 1 1 0 NA NA NA NA Barbara_Szczerba NA 20170308;20170322 Br16_C CTC
Br16_CC1 Br16 hsapiens cell_line NA NA breast cell_culture ctc_derived_cell_line 300000 0 0 NA NA NA NA Barbara_Szczerba NA 20170509;20170517 NA ctc_derived_cell_line
Br16_CD2 Br16 hsapiens cell_line NA NA breast cell_culture ctc_derived_cell_line 300000 0 0 NA NA NA NA Barbara_Szczerba NA 20170517;20170524;20170602 NA ctc_derived_cell_line
Br16_germline_reamp Br16 hsapiens patient NA NA normal healthy_mammary_gland healthy_mammary_gland 300000 0 0 NA NA NA re-amplified, FFPE Barbara_Szczerba 50101 20171030 NA healthy_mammary_gland
Br16_PT_reamp Br16 hsapiens patient NA NA breast primary_tumor tumor_cell 300000 0 0 NA NA NA re-amplified, FFPE Barbara_Szczerba NA 20171030 NA tumor_cell
Br16_SA2 Br16 hsapiens cell_line NA NA breast cell_culture ctc_derived_cell_line 300000 0 0 NA NA NA NA Barbara_Szczerba NA 20170517;20170524;20170602 NA ctc_derived_cell_line
Br16_SC1 Br16 hsapiens cell_line NA NA breast cell_culture ctc_derived_cell_line 300000 0 0 NA NA NA NA Barbara_Szczerba NA 20170509;20170517 NA ctc_derived_cell_line
Br16_SD2 Br16 hsapiens cell_line NA NA breast cell_culture ctc_derived_cell_line 300000 0 0 NA NA NA NA Barbara_Szczerba NA 20170517;20170524;20170602 NA ctc_derived_cell_line
Br23_12 Br23 hsapiens patient NA NA normal WBC WBC 1 0 0 NA NA NA reference Barbara_Szczerba 160422 20170308;20170322 NA WBC
Br23_13 Br23 hsapiens patient NA NA normal WBC WBC 1 0 0 NA NA NA reference Barbara_Szczerba 160422 20170308;20170322 NA WBC
Br23_14 Br23 hsapiens patient NA NA normal WBC WBC 1 0 0 NA NA NA reference Barbara_Szczerba 160422 20170308;20170322 NA WBC
Expand Down Expand Up @@ -419,4 +404,4 @@ Pr9_CTC_5 Pr9 hsapiens patient NA NA prostate CTC-single CTC 1 1 0 NA NA 0 NA Ba
Pr9_CTC_6 Pr9 hsapiens patient NA NA prostate CTC-cluster CTC 3 3 0 3 cPr9-1 0 NA Barbara_Szczerba 170125 20170517;20170524;20170602 NA CTC
Pr9_CTC_7 Pr9 hsapiens patient NA NA normal WBC WBC 2 0 2 NA NA 0 reference Barbara_Szczerba 170125 20170517;20170524;20170602 NA WBC
Pr9_CTC_8 Pr9 hsapiens patient NA NA normal WBC WBC 7 0 0 NA NA NA reference Barbara_Szczerba 170125 20170628 NA WBC
Pr9_CTC_9 Pr9 hsapiens patient NA NA prostate CTC-single CTC 1 1 0 NA NA 0 NA Barbara_Szczerba 170131 20170509;20170517 NA CTC
Pr9_CTC_9 Pr9 hsapiens patient NA NA prostate CTC-single CTC 1 1 0 NA NA 0 NA Barbara_Szczerba 170131 20170509;20170517 NA CTC

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