feat(src/anno.rs): add read_vcf function #42
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| name: CI-rust | |
| on: | |
| push: | |
| branches: | |
| - main | |
| paths: | |
| - src/** | |
| - examples/** | |
| - Cargo.toml | |
| - .github/workflows/test.yml | |
| pull_request: | |
| branches: | |
| - main | |
| paths: | |
| - src/** | |
| - examples/** | |
| - Cargo.toml | |
| - .github/workflows/test.yml | |
| concurrency: | |
| group: ${{ github.workflow }}-${{ github.ref }} | |
| cancel-in-progress: true | |
| #ref https://github.com/pola-rs/polars/blob/main/.github/workflows/test-rust.yml | |
| env: | |
| RUSTFLAGS: -C debuginfo=0 # Do not produce debug symbols to keep memory usage down | |
| jobs: | |
| Formatting: | |
| runs-on: ubuntu-latest | |
| steps: | |
| - name: Checkout repository | |
| uses: actions/checkout@v4 | |
| with: | |
| fetch-depth: 1 | |
| - name: Install stable toolchain | |
| uses: actions-rs/toolchain@v1 | |
| with: | |
| toolchain: stable | |
| override: true | |
| components: rustfmt | |
| - name: Check format | |
| run: cargo fmt -- --check | |
| Linting: | |
| runs-on: ubuntu-latest | |
| steps: | |
| - name: Checkout repository | |
| uses: actions/checkout@v4 | |
| - name: Install stable toolchain | |
| uses: actions-rs/toolchain@v1 | |
| with: | |
| toolchain: stable | |
| override: true | |
| components: clippy | |
| - name: Lint with clippy | |
| uses: actions-rs/clippy-check@v1 | |
| with: | |
| token: ${{ secrets.GITHUB_TOKEN }} | |
| Testing: | |
| needs: Formatting | |
| runs-on: ${{ matrix.os }} | |
| strategy: | |
| fail-fast: false | |
| matrix: | |
| build: [beta, stable, windows, macos] | |
| include: | |
| - build: macos | |
| os: macos-latest | |
| rust: stable | |
| - build: windows | |
| os: windows-latest | |
| rust: stable | |
| - build: beta | |
| os: ubuntu-latest | |
| rust: beta | |
| - build: stable | |
| os: ubuntu-latest | |
| rust: stable | |
| steps: | |
| - name: Checkout repository | |
| uses: actions/checkout@v4 | |
| with: | |
| fetch-depth: 1 | |
| - uses: actions-rs/toolchain@v1 | |
| with: | |
| toolchain: ${{ matrix.rust }} | |
| override: true | |
| - name: Install ${{ matrix.rust }} toolchain | |
| uses: actions-rs/toolchain@v1 | |
| with: | |
| toolchain: ${{ matrix.rust }} | |
| override: true | |
| - name: Run tests | |
| uses: actions-rs/cargo@v1 | |
| with: | |
| command: test | |
| args: --all --no-fail-fast | |
| MSRV: | |
| needs: Formatting | |
| runs-on: ubuntu-latest | |
| env: | |
| MSRV_VERSION: 1.70.0 | |
| steps: | |
| - name: Checkout repository | |
| uses: actions/checkout@v4 | |
| with: | |
| fetch-depth: 1 | |
| - name: Install MSRV toolchain | |
| uses: actions-rs/toolchain@v1 | |
| with: | |
| toolchain: ${{ env.MSRV_VERSION }} | |
| override: true | |
| - name: check if README matches MSRV defined here | |
| run: grep $MSRV_VERSION README.md | |
| - name: Run tests | |
| uses: actions-rs/cargo@v1 | |
| with: | |
| command: test | |
| args: --all --no-fail-fast |