feat: add transcript lookup for genes

server/curfu/routers/utilities.py

@@ -68,6 +68,7 @@ async def get_transcripts_for_gene(request: Request, gene: str) -> Dict:
     :param str gene: gene term provided by user
     :return: Dict containing transcripts if lookup succeeds, or warnings upon failure
     """
+<<<<<<< HEAD
 <<<<<<< HEAD
     normalized = request.app.state.fusor.gene_normalizer.normalize(gene)
     symbol = normalized.gene_descriptor.label
@@ -78,6 +79,16 @@ async def get_transcripts_for_gene(request: Request, gene: str) -> Dict:
 =======
     transcripts = await request.app.state.fusor.cool_seq_tool.uta_db.get_transcripts(gene)
 >>>>>>> c11b094 (feat!: adding transcript lookup for genes)
+=======
+    normalized = request.app.state.fusor.gene_normalizer.normalize(gene)
+    symbol = normalized.gene_descriptor.label
+    print(symbol)
+    print(request.app.state.fusor.cool_seq_tool.uta_db)
+    transcripts = await request.app.state.fusor.cool_seq_tool.uta_db.get_transcripts(symbol)
+    transcripts_dict = transcripts.to_dict()
+    tx_for_gene = transcripts_dict["tx_ac"]
+    print(transcripts.glimpse())
+>>>>>>> 047cc77 (feat: add transcript lookup for genes)
     if transcripts.is_empty():
         return {"warnings": [f"No matching transcripts: {gene}"], "transcripts": []}
     else:

server/curfu/schemas.py

@@ -258,11 +258,15 @@ class GetTranscriptsResponse(Response):
 class GetGeneTranscriptsResponse(Response):
     """Response model for MANE transcript retrieval endpoint."""
 
+<<<<<<< HEAD
 <<<<<<< HEAD
     transcripts: Optional[List[str]] = None
 =======
     transcripts: Optional[pl.DataFrame]
 >>>>>>> c11b094 (feat!: adding transcript lookup for genes)
+=======
+    transcripts: Optional[Dict]
+>>>>>>> 047cc77 (feat: add transcript lookup for genes)
 
 
 class ServiceInfoResponse(Response):