feat: update calls to fusor and cool-seq-tool with updated params

cancervariants · Aug 21, 2024 · 053843e · 053843e
1 parent b2c6787
commit 053843e
Show file tree

Hide file tree

Showing 2 changed files with 3 additions and 3 deletions.
diff --git a/server/pyproject.toml b/server/pyproject.toml
@@ -29,7 +29,7 @@ dependencies = [
     "boto3",
     "botocore",
     "fusor ~= 0.2.0",
-    "cool-seq-tool ~= 0.5.1",
+    "cool-seq-tool ~= 0.7.0",
     "pydantic == 2.4.2",
     "gene-normalizer ~= 0.4.0",
 ]

diff --git a/server/src/curfu/routers/constructors.py b/server/src/curfu/routers/constructors.py
@@ -109,7 +109,7 @@ async def build_tx_segment_gct(
     tx_segment, warnings = await request.app.state.fusor.transcript_segment_element(
         tx_to_genomic_coords=False,
         transcript=parse_identifier(transcript),
-        chromosome=parse_identifier(chromosome),
+        genomic_ac=parse_identifier(chromosome),
         seg_start_genomic=start,
         seg_end_genomic=end,
     )
@@ -145,7 +145,7 @@ async def build_tx_segment_gcg(
     tx_segment, warnings = await request.app.state.fusor.transcript_segment_element(
         tx_to_genomic_coords=False,
         gene=gene,
-        chromosome=parse_identifier(chromosome),
+        genomic_ac=parse_identifier(chromosome),
         seg_start_genomic=start,
         seg_end_genomic=end,
     )