Deal with odd failure of docker build on circleci (builds locally fine)

cancerit · Nov 16, 2021 · bb9b315 · bb9b315
1 parent 2df5bae
commit bb9b315
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diff --git a/Dockerfile b/Dockerfile
@@ -45,6 +45,8 @@ ENV VIRTUAL_ENV=$OPT/venv
 RUN python3.9 -m venv $VIRTUAL_ENV
 ENV PATH="$VIRTUAL_ENV/bin:$PATH"
 
+RUN pip install --no-cache-dir --upgrade pip==21.3.1 && pip install --no-cache-dir Cython==0.29.24
+
 COPY pycroquet/ pycroquet/
 COPY README.md setup.py requirements.txt requirements-dev.txt ./
 RUN pip install --no-cache-dir -r requirements-dev.txt

diff --git a/requirements-dev.txt b/requirements-dev.txt
@@ -9,7 +9,7 @@ pluggy==0.13.1
 py==1.10.0
 pygas==1.0.4
 pyparsing==2.4.7
-pysam==0.16.0.1
+pysam==0.18.0
 pytest==6.2.4
 pytest-cov==2.12.1
 python-magic==0.4.24

diff --git a/requirements.txt b/requirements.txt
@@ -2,6 +2,6 @@ click==8.0.1
 click-option-group==0.5.3
 Cython==0.29.24
 pygas==1.0.4
-pysam==0.16.0.1
+pysam==0.18.0
 python-magic==0.4.24
 PyYAML==5.4.1