GitHub - cancer-genomics/trellis: Structural variant classes and methods

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Structural variant classes and methods

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Name		Name	Last commit message	Last commit date
Latest commit History 921 Commits
R		R
data-derived		data-derived
data-raw		data-raw
data		data
inst/extdata		inst/extdata
man		man
tests		tests
vignettes		vignettes
.DS_Store		.DS_Store
.Rbuildignore		.Rbuildignore
.gitignore		.gitignore
DESCRIPTION		DESCRIPTION
NAMESPACE		NAMESPACE
README		README
contributing.md		contributing.md

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Trellis is a software designed to identify structural variants from whole genome sequenced tumor only BAM files.

Trellis V2 is modified to work on whole genome sequenced tumor only CRAM files. 

Install the latest version of this package from GitHub
install.packages("devtools")
devtools::install_github("cancer-genomics/trellis")