No such keg: /opt/homebrew/Cellar/r

R CMD check found WARNINGs

Process completed with exit code 1.

R CMD check found WARNINGs

Process completed with exit code 1.

R CMD check found WARNINGs

Process completed with exit code 1.

R CMD check found WARNINGs

Process completed with exit code 1.

Node.js 16 actions are deprecated. Please update the following actions to use Node.js 20: r-lib/actions/setup-pandoc@v1, actions/cache@v2. For more information see: https://github.blog/changelog/2023-09-22-github-actions-transitioning-from-node-16-to-node-20/.

The following actions uses node12 which is deprecated and will be forced to run on node16: r-lib/actions/setup-pandoc@v1, actions/cache@v2. For more info: https://github.blog/changelog/2023-06-13-github-actions-all-actions-will-run-on-node16-instead-of-node12-by-default/

pkg-config 0.29.2_3 is already installed and up-to-date. To reinstall 0.29.2_3, run: brew reinstall pkg-config

HOMEBREW_NO_INSTALLED_DEPENDENTS_CHECK is set: not checking for outdated dependents or dependents with broken linkage!

Undocumented arguments in Rd file 'fill_in_missing_peaks.Rd'

Undocumented arguments in Rd file 'fill_in_missing_peaks.Rd'

unable to access index for repository https://bioconductor.org/packages/3.18/bioc/bin/macosx/big-sur-arm64/contrib/4.4:

unable to access index for repository https://bioconductor.org/packages/3.18/data/annotation/bin/macosx/big-sur-arm64/contrib/4.4:

unable to access index for repository https://bioconductor.org/packages/3.18/data/experiment/bin/macosx/big-sur-arm64/contrib/4.4:

unable to access index for repository https://bioconductor.org/packages/3.18/workflows/bin/macosx/big-sur-arm64/contrib/4.4:

unable to access index for repository https://bioconductor.org/packages/3.18/books/bin/macosx/big-sur-arm64/contrib/4.4:

r-lib/actions/setup-pandoc@v1 is deprecated. Please update your workflow to use the 'v2' version.

Node.js 16 actions are deprecated. Please update the following actions to use Node.js 20: r-lib/actions/setup-pandoc@v1, actions/cache@v2. For more information see: https://github.blog/changelog/2023-09-22-github-actions-transitioning-from-node-16-to-node-20/.

The following actions uses node12 which is deprecated and will be forced to run on node16: r-lib/actions/setup-pandoc@v1, actions/cache@v2. For more info: https://github.blog/changelog/2023-06-13-github-actions-all-actions-will-run-on-node16-instead-of-node12-by-default/

Undocumented arguments in Rd file 'fill_in_missing_peaks.Rd'

Undocumented arguments in Rd file 'fill_in_missing_peaks.Rd'

r-lib/actions/setup-pandoc@v1 is deprecated. Please update your workflow to use the 'v2' version.

Node.js 16 actions are deprecated. Please update the following actions to use Node.js 20: r-lib/actions/setup-pandoc@v1. For more information see: https://github.blog/changelog/2023-09-22-github-actions-transitioning-from-node-16-to-node-20/.

The following actions uses node12 which is deprecated and will be forced to run on node16: r-lib/actions/setup-pandoc@v1. For more info: https://github.blog/changelog/2023-06-13-github-actions-all-actions-will-run-on-node16-instead-of-node12-by-default/

unable to access index for repository https://bioconductor.org/packages/3.18/bioc/bin/windows/contrib/4.4:

unable to access index for repository https://bioconductor.org/packages/3.18/data/annotation/bin/windows/contrib/4.4:

unable to access index for repository https://bioconductor.org/packages/3.18/data/experiment/bin/windows/contrib/4.4:

unable to access index for repository https://bioconductor.org/packages/3.18/workflows/bin/windows/contrib/4.4:

unable to access index for repository https://bioconductor.org/packages/3.18/books/bin/windows/contrib/4.4:

Undocumented arguments in Rd file 'fill_in_missing_peaks.Rd'

Undocumented arguments in Rd file 'fill_in_missing_peaks.Rd'

r-lib/actions/setup-pandoc@v1 is deprecated. Please update your workflow to use the 'v2' version.

Node.js 16 actions are deprecated. Please update the following actions to use Node.js 20: r-lib/actions/setup-pandoc@v1, actions/cache@v2. For more information see: https://github.blog/changelog/2023-09-22-github-actions-transitioning-from-node-16-to-node-20/.

The following actions uses node12 which is deprecated and will be forced to run on node16: r-lib/actions/setup-pandoc@v1, actions/cache@v2. For more info: https://github.blog/changelog/2023-06-13-github-actions-all-actions-will-run-on-node16-instead-of-node12-by-default/

Undocumented arguments in Rd file 'fill_in_missing_peaks.Rd'

Undocumented arguments in Rd file 'fill_in_missing_peaks.Rd'