change pybedtools

calico · Jun 17, 2024 · 877bdb7 · 877bdb7
1 parent 248a7e9
commit 877bdb7
Show file tree

Hide file tree

Showing 2 changed files with 2 additions and 2 deletions.
diff --git a/pyproject.toml b/pyproject.toml
@@ -24,7 +24,7 @@ dependencies = [
     "numpy~=1.24.3",
     "pandas~=1.5.3",
     "pybigwig~=0.3.18",
-    "pybedtools~=0.9.0",
+    "pybedtools~=0.10.0",
     "pysam~=0.22.0",
     "qnorm~=0.8.1",
     "seaborn~=0.12.2",

diff --git a/tests/test_snp.py b/tests/test_snp.py
@@ -6,7 +6,7 @@
 
 from baskerville.dataset import targets_prep_strand
 
-stat_keys = ["logSUM", "logD2"]
+stat_keys = ["logSUM", "logD2", "logSAD"]
 fasta_file = "tests/data/hg38_1m.fa.gz"
 targets_file = "tests/data/tiny/hg38/targets.txt"
 params_file = "tests/data/eval/params.json"