fix download gcs

src/baskerville/helpers/gcs_utils.py

@@ -4,7 +4,7 @@
 
 import os
 import logging
-
+import pdb
 from base64 import b64decode
 from json import loads
 from os.path import exists, join, isfile
@@ -215,6 +215,8 @@ def download_rename_inputs(filepath: str, temp_dir: str) -> str:
     Returns: new filepath in the local machine
     """
     _, filename = split_gcs_uri(filepath)
+    if "/" in filename:
+        filename = filename.split("/")[-1]
     download_from_gcs(filepath, f"{temp_dir}/{filename}")
     return f"{temp_dir}/{filename}"
 

src/baskerville/scripts/hound_snp_gcs.py

@@ -18,6 +18,7 @@
 import os
 import tempfile
 import shutil
+import pdb
 import tensorflow as tf
 from baskerville.helpers.gcs_utils import (
     upload_folder_gcs,