Skip to content

Issues: calico/basenji

New issue

Have a question about this project? Sign up for a free GitHub account to open an issue and contact its maintainers and the community.

Sign up for GitHub

By clicking “Sign up for GitHub”, you agree to our terms of service and privacy statement. We’ll occasionally send you account related emails.

Already on GitHub? Sign in to your account

74 Open 98 Closed
74 Open 98 Closed
Author
Filter by author
Loading
Label
Filter by label
Loading
Use alt + click/return to exclude labels
or ⇧ + click/return for logical OR
Projects
Filter by project
Loading
Milestones
Filter by milestone
Loading
Assignee
Filter by who’s assigned
Sort
Sort by
Newest Oldest Most commented Least commented Recently updated Least recently updated Best match
Most reactions
👍 👎 😄 🎉 😕 ❤️ 🚀 👀

Issues list

Plotting Error in basenji_test.py
#203 opened Dec 9, 2024 by ratheraarif
Using the same architecture and training parameters in pytorch, the model fails to converge.
#201 opened Oct 31, 2024 by bioczsun
5
akita train error
#200 opened Jul 31, 2024 by guandailu
AssertionError, Basenji_test.py 'Conv1D' object has no attribute 'input_shape'
#199 opened Jun 5, 2024 by PouriaAzadehR
1
Question of expected data
#198 opened Jun 3, 2024 by seraphimangel77
1
basenji_read overflow
#196 opened May 20, 2024 by ElArquitectorgo
1
Question about the preprocessing script bam_cov.py
#195 opened May 15, 2024 by whui2bioinformatics
1
Problems during model training.
#192 opened Apr 6, 2024 by amingc3
7
Reproduce the Enformer's input sequences split
#190 opened Mar 5, 2024 by sararb
1
Issue with final matrix?
#188 opened Jan 11, 2024 by 16nbb1
When using Akita for single-cell prediction on the HCT116 cell line, the Pearson correlation coefficient is much lower.
#186 opened Nov 25, 2023 by 1944498970
8
How to convert the keras model to a basenji model
#180 opened Oct 9, 2023 by houruiyan
1
Stable environment configuration
#179 opened Sep 27, 2023 by tzhu-bio
1
handling blacklist\unmappable
#176 opened Aug 21, 2023 by yardenmatok203
1
Expose 'raw' as an argument?
#173 opened Aug 10, 2023 by Yaoyx
2
.hic
#172 opened Aug 6, 2023 by yardenmatok203
None in maps
#171 opened Jul 29, 2023 by yardenmatok203
4
Problem with calculating the target based on the gene sequence
#170 opened Jul 24, 2023 by wananal
1
No checkpoints found.
#169 opened Jul 19, 2023 by houruiyan
1
distiller
#168 opened Jul 8, 2023 by yardenmatok203
6
Weird targets
#167 opened Jul 1, 2023 by yardenmatok203
2
Output regions from Akita
#166 opened Jun 21, 2023 by ahmedabbas811
1
error with akita_data. py
#165 opened Jun 17, 2023 by yardenmatok203
3
Question about Gene Expression Training Preprocessing
#161 opened May 5, 2023 by wkl1990
3
akita can't train
#160 opened Apr 16, 2023 by bioczsun
1
ProTip! Exclude everything labeled bug with -label:bug.