Rename main module to cadet-cli

.github/workflows/ci.yml

@@ -59,4 +59,4 @@ jobs:
 
     - name: Verify installation
       run: |
-        ./build/install/bin/chromatogram --version
+        ./build/install/bin/cadet-cli --version

README.md

@@ -69,6 +69,6 @@ Suppose your model is contained in the HDF5 file `model.h5`, then you can do the
 * Compute the chromatogram via
 
   ```
-	chromatogram.exe model.h5 -o chromatogram.csv -e 1e-100 -p 250 -P 20 -t 4
+	cadet-cli.exe model.h5 -o chromatogram.csv -e 1e-100 -p 250 -P 20 -t 4
   ```
   where no extrapolation method is used and, hence, the convergence detection tolerances are set to 0. This command also requests the usage of 250 decimal digits precision arithmetics (but only 20 digits of them are written to file), parallelization using 4 threads, and the total error to be less than 10^(-100). Extrapolation is enabled by adding `-x MET` to the command line, where `MET` is one of `ide`, `ads`, `wem`, `wrm`, `iad`, `lum`, `ltm`, `ibt`, `btm`, `nam`, `rem`, or `sgr`. The results are written to the file `chromatogram.csv`.

src/CMakeLists.txt

@@ -130,9 +130,9 @@ target_include_directories(casema_io PUBLIC
 
 
 
-add_executable(chromatogram $<TARGET_OBJECTS:casema_common> $<TARGET_OBJECTS:casema_io> ProgressBar.cpp chromatogram.cpp)
-target_link_libraries(chromatogram PUBLIC CASEMA::CompileOptions PRIVATE GMP::GMP MPFR::MPFR MPC::MPC Eigen3::Eigen)
-target_include_directories(chromatogram PUBLIC 
+add_executable(cadet-cli $<TARGET_OBJECTS:casema_common> $<TARGET_OBJECTS:casema_io> ProgressBar.cpp cadet-cli.cpp)
+target_link_libraries(cadet-cli PUBLIC CASEMA::CompileOptions PRIVATE GMP::GMP MPFR::MPFR MPC::MPC Eigen3::Eigen)
+target_include_directories(cadet-cli PUBLIC 
 	"${CMAKE_BINARY_DIR}"
 	"${CMAKE_CURRENT_BINARY_DIR}"
 	"${CMAKE_CURRENT_SOURCE_DIR}"
@@ -144,19 +144,19 @@ target_include_directories(chromatogram PUBLIC
 
 if (OpenMP_FOUND)
 	target_link_libraries(casema_common PUBLIC OpenMP::OpenMP_CXX)
-	target_link_libraries(chromatogram PUBLIC OpenMP::OpenMP_CXX)
+	target_link_libraries(cadet-cli PUBLIC OpenMP::OpenMP_CXX)
 endif()
 if (HDF5_FOUND)
 	target_link_libraries(casema_io PUBLIC HDF5::HDF5)
-	target_link_libraries(chromatogram PUBLIC HDF5::HDF5)
+	target_link_libraries(cadet-cli PUBLIC HDF5::HDF5)
 endif()
 
 # ---------------------------------------------------
 #   Set installation related stuff
 # ---------------------------------------------------
 
-install(CODE "MESSAGE(\"\nInstall CHROMATOGRAM\n\")")
-install(TARGETS chromatogram RUNTIME)
+install(CODE "MESSAGE(\"\nInstall cadet-cli\n\")")
+install(TARGETS cadet-cli RUNTIME)
 
 ## Info message
-message(STATUS "Added CHROMATOGRAM module")
+message(STATUS "Added cadet-cli module")