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Add autodetect cadetpath functionality from CADET-Process to CADET-Python #89

Add autodetect cadetpath functionality from CADET-Process to CADET-Python

Add autodetect cadetpath functionality from CADET-Process to CADET-Python #89

Workflow file for this run

name: pipeline
on:
push:
branches:
- master
- dev
pull_request:
jobs:
test-job:
runs-on: ubuntu-latest
strategy:
matrix:
python-version: ["3.8", "3.9", "3.10", "3.11"]
steps:
- uses: actions/checkout@v3
- name: Get Date
id: get-date
run: echo "today=$(/bin/date -u '+%Y%m%d')" >> $GITHUB_OUTPUT
shell: bash
- name: Setup Conda Environment
uses: conda-incubator/setup-miniconda@v3
with:
miniforge-variant: Mambaforge
use-mamba: true
activate-environment: cadet-process
channels: conda-forge,
- name: Cache conda
uses: actions/cache@v3
env:
# Increase this value to reset cache if environment.yml has not changed
CACHE_NUMBER: 0
with:
path: ${{ env.CONDA }}/envs
key: python_${{ matrix.python-version }}-${{ steps.get-date.outputs.today }}-${{ env.CACHE_NUMBER }}
- name: Test Wheel install and import
run: |
mamba create -n testing python==${{ matrix.python-version }}
conda activate testing
pip install wheel
which pip
which mamba
python setup.py bdist_wheel
cd dist
pip install CADET_Python*.whl
python -c "import cadet; print(cadet.__version__)"
cd ..
- name: Test with pytest
run: |
pip install .[testing]
mamba install cadet -c conda-forge
mamba list
which cadet-cli
pytest tests --rootdir=tests -m "not slow"