update to pymoo 0.5.0

bumped version number
changed pymoo requirements for package

CADETMatch.pyproj

@@ -12,7 +12,7 @@
     <ProjectTypeGuids>{888888a0-9f3d-457c-b088-3a5042f75d52}</ProjectTypeGuids>
     <LaunchProvider>Standard Python launcher</LaunchProvider>
     <InterpreterId>CondaEnv|CondaEnv|cadet_devel</InterpreterId>
-    <CommandLineArguments>"F:\MCMC\Synthetic\SMAMultiple_Mult\release_5\SMA_MCMC_pump_delay_1000\MCMC_SMA_pump.json" 1</CommandLineArguments>
+    <CommandLineArguments>"F:\cadet_release_test\search\unsga3\dextran.json" 12</CommandLineArguments>
     <EnableNativeCodeDebugging>False</EnableNativeCodeDebugging>
     <SuppressConfigureTestFrameworkPrompt>true</SuppressConfigureTestFrameworkPrompt>
     <InterpreterArguments>
@@ -80,7 +80,6 @@
     <Compile Include="CADETMatch\match.py" />
     <Compile Include="CADETMatch\mcmc_plot_tube.py" />
     <Compile Include="CADETMatch\mle.py" />
-    <Compile Include="CADETMatch\modEnsemble.py" />
     <Compile Include="CADETMatch\obsolete\obsolete_score.py" />
     <Compile Include="CADETMatch\obsolete\scores\breakthrough.py" />
     <Compile Include="CADETMatch\obsolete\scores\breakthroughCross.py" />

CADETMatch/pymoo_config.py

@@ -1,22 +1,18 @@
-import copy
 import csv
-import multiprocessing
 import time
 import numpy
 import random
 import pickle
 from pathlib import Path
 
-import CADETMatch.jacobian as jacobian
 import CADETMatch.pareto as pareto
 import CADETMatch.progress as progress
 import CADETMatch.sub as sub
 import CADETMatch.util as util
 import CADETMatch.pop as pop
 
 from pymoo.factory import get_algorithm, get_reference_directions
-from pymoo.optimize import minimize
-from pymoo.model.problem import Problem
+from pymoo.core.problem import Problem
 import attr
 
 
@@ -36,7 +32,7 @@ class ProblemState:
 class MyProblem(Problem):
 
     def __init__(self, n_var, n_obj, lb, ub, evaluate_function, problem_state):
-        super().__init__(n_var=n_var, n_obj=n_obj, n_constr=0, xl=lb, xu=ub, elementwise_evaluation=False)
+        super().__init__(n_var=n_var, n_obj=n_obj, n_constr=0, xl=lb, xu=ub)
         self.evaluate_function = evaluate_function
         self.problem_state = problem_state
 

CADETMatch/smoothing.py

@@ -9,16 +9,16 @@
 
 import CADETMatch.util as util
 
-from pymoo.model.problem import Problem
+from pymoo.core.problem import ElementwiseProblem
 from pymoo.factory import get_algorithm, get_reference_directions
 from pymoo.optimize import minimize
 
 butter_order = 3
 
-class TargetProblem(Problem):
+class TargetProblem(ElementwiseProblem):
 
     def __init__(self, lb, ub, sse_target, func, values, fs):
-        super().__init__(n_var=1, n_obj=1, n_constr=0, xl=lb, xu=ub, elementwise_evaluation=True)
+        super().__init__(n_var=1, n_obj=1, n_constr=0, xl=lb, xu=ub)
         self.sse_target = sse_target
         self.func = func
         self.values = values
@@ -36,10 +36,10 @@ def _evaluate(self, crit_fs, out, *args, **kwargs):
             error = numpy.inf
         out["F"] = error
 
-class MaxDistance(Problem):
+class MaxDistance(ElementwiseProblem):
 
     def __init__(self, lb, ub, func, fs, values, x_min, y_min, p1, p2, factor):
-        super().__init__(n_var=1, n_obj=1, n_constr=0, xl=lb, xu=ub, elementwise_evaluation=True)
+        super().__init__(n_var=1, n_obj=1, n_constr=0, xl=lb, xu=ub)
         self.func = func
         self.fs = fs   
         self.values = values

CADETMatch/version.py

@@ -18,5 +18,5 @@
 __email__ = "[email protected]"
 __license__ = "GNU General Public License v3 (GPLv3)"
 __copyright__ = "2020 %s" % __author__
-__version__ = "0.8.13"
+__version__ = "0.8.14"
 __uri__ = "https://github.com/modsim/CADET-Match"

setup.py

@@ -21,7 +21,7 @@
           'emcee>=3.0.2',
           'SAlib',
           'corner>=2.1.0',
-          'pymoo==0.4.2.2',
+          'pymoo>=0.5.0',
           'psutil>=5.7.0',
           'openpyxl>=3.0.3',
           'numpy>=1.18.5',